Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol _
Gene Symbol Synonym OsPOP1, POP1
CGSNL Gene Name _
Gene Name Synonym Prolyl endopeptidase, Prolyl Oligopeptidase 1, PROLYL OLIGOPEPTIDASE 1
Protein Name
Allele
Chromosome No. 1
Explanation D16061. LOC_Os01g01830. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). (http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml) GO:0120126: response to copper ion starvation.
Trait Class Biochemical character
Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID LOC_Os01g01830.1
RAP ID Os01g0108200
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Dong C., He F., Berkowitz O., Liu J., Cao P., Tang M., Shi H., Wang W., Li Q., Shen Z., Whelan J., Zheng L.
Plant Cell 2018  30(10)  2267-2285
Alternative Splicing Plays a Critical Role in Maintaining Mineral Nutrient Homeostasis in Rice (<i>Oryza sativa</i>).
Ouyang S., Zhu W., Hamilton J., Lin H., Campbell M., Childs K., Françoise Thibaud-Nissen, Renae L Malek, Lee Y., Zheng L., Orvis J., Haas B., Wortman J., C Robin Buell
Nucleic Acids Res. 2007  35(Database issue)  D883-7
The TIGR Rice Genome Annotation Resource: improvements and new features.
Lokesh P Tripathi, R Sowdhamini
BMC Genomics 2006  7  200
Cross genome comparisons of serine proteases in Arabidopsis and rice.
Sasaki,T., Song,J., Koga-Ban,Y., Matsui,E., Fang,F., Higo,H., Nagasaki,H., Hori,M., Miya,M. and Murayama-Kayano,E.
Plant J. 1994  6(4)  615-624
Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library.
DB Reference
Gramene ID -
Ontologies
Gene Ontology serine-type endopeptidase activity( GO:0004252 )
chloroplast( GO:0009507 )
serine-type exopeptidase activity( GO:0070008 )
response to copper ion( GO:0046688 )
Trait Ontology copper sensitivity( TO:0000021 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Jun 3, 2019

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