Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | _ |
| Gene Symbol Synonym | OsRH2, RH2, eIF4A-3 |
| CGSNL Gene Name | _ |
| Gene Name Synonym | initiation factor eIF-4A, RNA helices 2, Eukaryotic initiation factor 4A-3 |
| Protein Name | |
| Allele | |
| Chromosome No. | 1 |
| Explanation | D22665. Q5VNM3. LOC_Os01g45190. DEAD-box RNA helicase protein. homologous to eukaryotic initiation factor 4AIII (eIF4AIII). major eIF4AIII in rice. |
| Trait Class |
Reproductive organ - Heading date
Seed Reproductive organ - Pollination, fertilization, fertility Reproductive organ - Spikelet, flower, glume, awn Vegetative organ - Culm |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK073640
|
| MSU ID |
LOC_Os01g45190.1
LOC_Os01g45190.3 |
| RAP ID |
Os01g0639100 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
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| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Huang C.K., Sie Y.S., Chen Y.F., Huang T.S., Lu C.A.
BMC Plant Biol. 2016 16(1) 84 Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.
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Xu J., Liu C., Li M., Hu J., Zhu L., Zeng D., Yang Y., Peng Y., Ruan B., Guo L., Li H.
Gene 2015 555(2) 318-28 A rice DEAD-box RNA helicase protein, OsRH17, suppresses 16S ribosomal RNA maturation in Escherichia coli.
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Ji Y., Tu P., Wang K., Gao F., Yang W., Zhu Y., Li S.
Acta Biochim. Biophys. Sin. (Shanghai) 2014 46(4) 305-12 Defining reference genes for quantitative real-time PCR analysis of anther development in rice.
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Sasaki,T., Song,J., Koga-Ban,Y., Matsui,E., Fang,F., Higo,H., Nagasaki,H., Hori,M., Miya,M. and Murayama-Kayano,E.
Plant J. 1994 6(4) 615-624 Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library.
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
response to hypoxia( GO:0001666 )
RNA binding( GO:0003723 ) ATP binding( GO:0005524 ) nucleolus( GO:0005730 ) rRNA processing( GO:0006364 ) mRNA processing( GO:0006397 ) ATP-dependent helicase activity( GO:0008026 ) nucleus( GO:0005634 ) cytoplasm( GO:0005737 ) pollen development( GO:0009555 ) embryonic development( GO:0009790 ) regulation of gibberellic acid mediated signaling( GO:0009937 ) regulation of gibberellin biosynthetic process( GO:0010371 ) membrane( GO:0016020 ) nuclear speck( GO:0016607 ) exon-exon junction complex( GO:0035145 ) photoperiodism, flowering( GO:0048573 ) regulation of seed development( GO:0080050 ) anther development( GO:0048653 ) |
| Trait Ontology |
plant height( TO:0000207 )
internode length( TO:0000145 ) days to heading( TO:0000137 ) embryo development trait( TO:0000620 ) spikelet fertility( TO:0000180 ) seed development trait( TO:0000653 ) gibberellic acid sensitivity( TO:0000166 ) |
| Plant Ontology |
plant embryo stage( PO:0007631 )
seed development stage( PO:0001170 ) pollen development stage( PO:0001007 ) leaf( PO:0025034 ) flag leaf( PO:0020103 ) anther development stage( PO:0001004 ) |
| Related Strains | |
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| Phenotype images | |
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| Last updated | |
| Oct 11, 2016 | |
