Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol _
Gene Symbol Synonym Os_F0794, OsFBDUF48, FBDUF48, PEG3, OsFBDUF48, FBDUF48
CGSNL Gene Name _
Gene Name Synonym paternally expressed gene 3, F-box-type E3 ubiquitin ligase FBDUF48
Protein Name
Allele
Chromosome No. 10
Explanation F-box protein. ROS1a Target gene. a gene in rice zygotes with paternal allele-dependent expression.
Trait Class Seed - Morphological traits
Seed - Morphological traits - Embryo
Seed - Physiological traits - Storage substances
Character as QTL - Yield and productivity
Expression
Sequence/Locus
cDNA Accession No. AK108172
MSU ID LOC_Os10g37540.1
RAP ID Os10g0519800
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Wang R., You X., Zhang C., Fang H., Wang M., Zhang F., Kang H., Xu X., Liu Z., Wang J., Zhao Q., Wang X., Hao Z., He F., Tao H., Wang D., Wang J., Fang L., Qin M., Zhao T., Zhang P., Xing H., Xiao Y., Liu W., Xie Q., Wang G.L., Ning Y.
Genome Biol. 2022  23(1)  154
An ORFeome of rice E3 ubiquitin ligases for global analysis of the ubiquitination interactome.
Kim M.Y., Ono A., Scholten S., Kinoshita T., Zilberman D., Okamoto T., Fischer R.L.
Proc. Natl. Acad. Sci. U.S.A. 2019  116(19)  9652-9657
DNA demethylation by ROS1a in rice vegetative cells promotes methylation in sperm.
Rahman M.H., Toda E., Kobayashi M., Kudo T., Koshimizu S., Takahara M., Iwami M., Watanabe Y., Sekimoto H., Yano K., Okamoto T.
Plant Cell Physiol. 2019  60(4)  725-737
Expression of Genes from Paternal Alleles in Rice Zygotes and Involvement of OsASGR-BBML1 in Initiation of Zygotic Development.
Yuan J., Chen S., Jiao W., Wang L., Wang L., Ye W., Lu J., Hong D., You S., Cheng Z., Yang D.L., Chen Z.J.
New Phytol. 2017   
Both maternally and paternally imprinted genes regulate seed development in rice.
Hua Z., Zou C., Shin-Han Shiu, Richard D Vierstra
PLoS ONE 2011  6(1)  e16219
Phylogenetic comparison of F-Box (FBX) gene superfamily within the plant kingdom reveals divergent evolutionary histories indicative of genomic drift.
Xu G., Ma H., Nei M., Kong H.
Proc. Natl. Acad. Sci. U.S.A. 2009  106(3)  835-40
Evolution of F-box genes in plants: different modes of sequence divergence and their relationships with functional diversification.
Jain M, Nijhawan A, Arora R, Agarwal P, Ray S, Sharma P, Kapoor S, Tyagi AK, Khurana JP.
Plant Physiol. 2007  143(4)  1467-1483
F-Box Proteins in Rice. Genome-Wide Analysis, Classification, Temporal and Spatial Gene Expression during Panicle and Seed Development, and Regulation by Light and Abiotic Stress.
DB Reference
Gramene ID -
Ontologies
Gene Ontology -
Trait Ontology seed width( TO:0000149 )
seed thickness( TO:0000304 )
1000-seed weight( TO:0000382 )
starch content( TO:0000696 )
embryo related trait( TO:0000064 )
Plant Ontology endosperm( PO:0009089 )
Related Strains
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Phenotype images
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Last updated
Feb 1, 2023

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