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Basic Information
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CGSNL Gene Symbol
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CHI6
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Gene Symbol Synonym
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CHI, OsCHI6, OsCHIL1, CHIL1
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CGSNL Gene Name
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CHALCONE ISOMERASE 6
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Gene Name Synonym
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chalcone isomerase, CHI-LIKE1, CHALCONE ISOMERASE-LIKE1
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Protein Name
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CHALCONE ISOMERASE 6
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Allele
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Chromosome No.
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11
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Explanation
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probable chalcone-flavonone isomerase 3 in Chen et al. 2019.
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Trait Class
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Biochemical character
Coloration - Anthocyanin
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK059463
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MSU ID
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LOC_Os11g02440.1
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RAP ID
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Os11g0116300
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Wu X., Yang L., Han J., Liu H., Chen G., Wang H., Feng X., Zhang W., Liu K., Zhang Z.
BMC Genomics 2025 26(1) 792
Integrated transcriptomic and metabolomic analysis unveils heat-tolerance-associated flavonoid metabolites and genes in the rice REL1-D mutant.
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Wang J., Zhang C., Li Y.
Genes (Basel) 2022 13(3)
Genome-Wide Identification and Expression Profiles of 13 Key Structural Gene Families Involved in the Biosynthesis of Rice Flavonoid Scaffolds.
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Pui Ying Lam, Wang L., Andy C W Lui, Liu H., Yuri Takeda-Kimura, Mo-Xian Chen, Fu-Yuan Zhu, Zhang J., Umezawa T., Tobimatsu Y., Lo C.
Plant Physiol. 2022 188(4) 1993-2011
Deficiency in flavonoid biosynthesis genes CHS, CHI, and CHIL alters rice flavonoid and lignin profiles.
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Wang Y., Du F., Wang J., Li Y., Zhang Y., Zhao X., Zheng T., Li Z., Xu J., Wang W., Fu B.
Int J Mol Sci 2021 22(17)
Molecular Dissection of the Gene <i>OsGA2ox8</i> Conferring Osmotic Stress Tolerance in Rice.
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Park S.I., Park H.L., Bhoo S.H., Lee S.W., Cho M.H.
Plants (Basel) 2021 10(10)
Biochemical and Molecular Characterization of the Rice Chalcone Isomerase Family.
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Oshima M., Taniguchi Y., Akasaka M., Abe K., Ichikawa H., Tabei Y., Tanaka J.
Breed. Sci. 2019 69(2) 244-254
Development of a visible marker trait based on leaf sheath-specific anthocyanin pigmentation applicable to various genotypes in rice.
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Chen X., Tao Y., Ali A., Zhuang Z., Guo D., Guo Q., Riaz A., Zhang H., Xu P., Liao Y., Wang J., Sun C., Xiang Q., Wu X.
Int J Mol Sci 2019 20(10)
Transcriptome and Proteome Profiling of Different Colored Rice Reveals Physiological Dynamics Involved in the Flavonoid Pathway.
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Park H.L., Lee S.W., Jung K.H., Hahn T.R., Cho M.H.
Phytochemistry 2013 96 57-71
Transcriptomic analysis of UV-treated rice leaves reveals UV-induced phytoalexin biosynthetic pathways and their regulatory networks in rice.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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response to UV( GO:0009411 )
flavonoid biosynthetic process( GO:0009813 )
chalcone isomerase activity( GO:0045430 )
anthocyanin biosynthetic process( GO:0009718 )
response to abscisic acid stimulus( GO:0009737 )
response to cytokinin stimulus( GO:0009735 )
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Trait Ontology
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UV light sensitivity( TO:0000160 )
abscisic acid sensitivity( TO:0000615 )
cytokinin sensitivity( TO:0000167 )
flavonoid content( TO:0000290 )
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Plant Ontology
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leaf( PO:0025034 )
root( PO:0009005 )
stem( PO:0009047 )
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Related Strains
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-
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Phenotype images
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-
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Last updated
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Dec 9, 2025
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Update info.