Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol _
Gene Symbol Synonym OsF5H1, F5H1, OsCAld5H1, CAld5H1, CYP84A5, OsCYP84A5
CGSNL Gene Name _
Gene Name Synonym ferulate 5-hydroxylase 1, Coniferaldehyde 5-hydroxylase 1
Protein Name
Chromosome No. 10
Trait Class Biochemical character
cDNA Accession No. AK067847
MSU ID LOC_Os10g36848.1
RAP ID Os10g0512400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Jiang J., Yang G., Xin Y., Wang Z., Yan W., Chen Z., Tang X., Xia J.
Genes (Basel) 2021  12(5) 
Overexpression of <i>OsMed16</i> Inhibits the Growth of Rice and Causes Spontaneous Cell Death.
Takeda Y., Suzuki S., Tobimatsu Y., Osakabe K., Osakabe Y., Ragamustari S.K., Sakamoto M., Umezawa T.
Plant J. 2019  97(3)  543-554
Lignin characterization of rice coniferaldehyde 5-hydroxylase loss-of-function mutants generated with the CRISPR/Cas9 system.
Takeda Y., Koshiba T., Tobimatsu Y., Suzuki S., Murakami S., Yamamura M., Rahman M.M., Takano T., Hattori T., Sakamoto M., Umezawa T.
Planta 2017   
Regulation of CONIFERALDEHYDE 5-HYDROXYLASE expression to modulate cell wall lignin structure in rice.
Koshiba T.a, Hirose N.a, Mukai M.a, Yamamura M.a, Hattori T.a d, Suzuki S.a, Sakamoto M.b, Umezawa T.a c
Plant Biotechnology 2013  30  157-167
Characterization of 5-hydroxyconiferaldehyde O-methyltransferase in Oryza sativa
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DB Reference
Gramene ID -
Gene Ontology monooxygenase activity( GO:0004497 )
iron ion binding( GO:0005506 )
lignan biosynthetic process( GO:0009807 )
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen( GO:0016705 )
heme binding( GO:0020037 )
lignin metabolic process( GO:0009808 )
inflorescence development( GO:0010229 )
cell wall macromolecule metabolic process( GO:0044036 )
Trait Ontology lignin content( TO:0000731 )
lignin biosynthesis trait( TO:0000733 )
stem length( TO:0000576 )
spikelet fertility( TO:0000180 )
stem elongation( TO:0006036 )
inflorescence development trait( TO:0000621 )
Plant Ontology stem elongation stage( PO:0007089 )
inflorescence development stage( PO:0001083 )
Related Strains
Phenotype images
Last updated
Oct 15, 2021