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Basic Information
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CGSNL Gene Symbol
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_
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Gene Symbol Synonym
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R2R3-MYB, OsMYB55/61-L, MYB55/61-L, OsMYB55, OsMYB61-L, MYB55, MYB61-L, OsMYB61L, MYB61L, OsMYB61b, MYB61b, Os2R_MYB53, 2R_MYB53, OsMYB2P-1, MYB2P-1, MYB2-62, OsMYB2-62
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CGSNL Gene Name
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_
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Gene Name Synonym
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MYB transcription factor 55/61L, R2R3-MYB Transcription Factor 53, R2R3-MYB transcription factor 2-62
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Protein Name
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Allele
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Chromosome No.
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5
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Explanation
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HQ858815. OsMYB61b in Zhao et al. 2019. OsMYB2P-1 in Naithani et al. 2023. GO:0099402: plant organ development. GO:1901348: positive regulation of secondary cell wall biogenesis. TO:0000993: cellulose content. GO:2001008: positive regulation of cellulose biosynthetic process. GO:2000280: regulation of root development.
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Trait Class
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Vegetative organ - Root
Tolerance and resistance - Stress tolerance
Character as QTL - Germination
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK104345
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MSU ID
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LOC_Os05g04820.1
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RAP ID
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Os05g0140100
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Peng W., Zhang Y., Xie H., Yu Y., Zhu M.
Front Plant Sci 2025 16 1668800
Research progress on the synergistic regulation of MYB transcription factor-mediated developmental plasticity and stress responses in rice.
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Zhang H.C., Gong Y.H., Tao T., Lu S., Zhou W.Y., Xia H., Zhang X.Y., Yang Q.Q., Zhang M.Q., Hong L.M., Guo Q.Q., Ren X.Z., Yang Z.D., Cai X.L., Ren D.Y., Gao J.P., Jin S.K., Leng Y.J.
BMC Genomics 2024 25(1) 797
Genome-wide identification of R2R3-MYB transcription factor subfamily genes involved in salt stress in rice (Oryza sativa L.).
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Naithani S., Mohanty B., Elser J., D'Eustachio P., Jaiswal P.
Plants (Basel) 2023 12(11)
Biocuration of a Transcription Factors Network Involved in Submergence Tolerance during Seed Germination and Coleoptile Elongation in Rice (<i>Oryza sativa</i>).
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Chen Y., Qi H., Yang L., Xu L., Wang J., Guo J., Zhang L., Tan Y., Pan R., Shu Q., Qian Q., Song S.
Cell Rep 2023 42(7) 112702
The OsbHLH002/OsICE1-OSH1 module orchestrates secondary cell wall formation in rice.
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Kang L., Teng Y., Cen Q., Fang Y., Tian Q., Zhang X., Wang H., Zhang X., Xue D.
Plants (Basel) 2022 11(15)
Genome-Wide Identification of R2R3-MYB Transcription Factor and Expression Analysis under Abiotic Stress in Rice.
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Mohanty B.
Front Genet 2021 12 639654
Promoter Architecture and Transcriptional Regulation of Genes Upregulated in Germination and Coleoptile Elongation of Diverse Rice Genotypes Tolerant to Submergence.
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Zhao K., Lin F., Romero-Gamboa SP., Saha P., Goh H.J., An G., Jung K.H., Hazen S.P., Bartley L.E.
Front Plant Sci 2019 10 1275
Rice Genome-Scale Network Integration Reveals Transcriptional Regulators of Grass Cell Wall Synthesis.
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Ye Y., Wu K., Chen J., Liu Q., Wu Y., Liu B., Fu X.
Rice (N Y) 2018 11(1) 36
OsSND2, a NAC family transcription factor, is involved in secondary cell wall biosynthesis through regulating MYBs expression in rice.
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Noda S., Koshiba T., Hattori T., Yamaguchi M., Suzuki S., Umezawa T.
Planta 2015 242(3) 589-600
The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
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Yilmaz,A., Nishiyama,M.Y. Jr., Fuentes,B.G., Souza,G.M., Janies,D., Gray,J. and Grotewold,E.
Plant Physiol. 2009 149(1) 171-180
GRASSIUS: a platform for comparative regulatory genomics across the grasses
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Jia L., Michael T Clegg, Jiang T.
Plant Physiol. 2004 134(2) 575-85
Evolutionary dynamics of the DNA-binding domains in putative R2R3-MYB genes identified from rice subspecies indica and japonica genomes.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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root development( GO:0048364 )
secondary cell wall biogenesis( GO:0009834 )
plant-type cell wall organization( GO:0009664 )
cell wall thickening( GO:0052386 )
cellulose biosynthetic process( GO:0030244 )
nucleus( GO:0005634 )
seed germination( GO:0009845 )
response to flooding( GO:0009413 )
response to deep water( GO:0030912 )
DNA binding( GO:0003677 )
chromatin binding( GO:0003682 )
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Trait Ontology
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submergence tolerance( TO:0000524 )
root development trait( TO:0000656 )
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Plant Ontology
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0 seed germination stage( PO:0007057 )
coleoptile emergence stage( PO:0007045 )
root development stage( PO:0007520 )
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Related Strains
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Phenotype images
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Last updated
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Jan 12, 2026
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Update info.