Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol _
Gene Symbol Synonym R2R3-MYB
CGSNL Gene Name _
Gene Name Synonym MYB-related transcription factor
Protein Name
Allele
Chromosome No. 5
Explanation HQ858811.
Trait Class Tolerance and resistance - Stress tolerance
Character as QTL - Germination
Other
Expression
Sequence/Locus
cDNA Accession No. AK068595
MSU ID LOC_Os05g51160.1
LOC_Os05g51160.2
RAP ID Os05g0589400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Naithani S., Mohanty B., Elser J., D'Eustachio P., Jaiswal P.
Plants (Basel) 2023  12(11) 
Biocuration of a Transcription Factors Network Involved in Submergence Tolerance during Seed Germination and Coleoptile Elongation in Rice (<i>Oryza sativa</i>).
Yilmaz,A., Nishiyama,M.Y. Jr., Fuentes,B.G., Souza,G.M., Janies,D., Gray,J. and Grotewold,E.
Plant Physiol. 2009  149(1)  171-180
GRASSIUS: a platform for comparative regulatory genomics across the grasses
Jia L., Michael T Clegg, Jiang T.
Plant Physiol. 2004  134(2)  575-85
Evolutionary dynamics of the DNA-binding domains in putative R2R3-MYB genes identified from rice subspecies indica and japonica genomes.
DB Reference
Gramene ID -
Ontologies
Gene Ontology DNA binding( GO:0003677 )
chromatin binding( GO:0003682 )
response to flooding( GO:0009413 )
seed germination( GO:0009845 )
Trait Ontology submergence tolerance( TO:0000524 )
Plant Ontology 0 seed germination stage( PO:0007057 )
coleoptile emergence stage( PO:0007045 )
Related Strains
-
Phenotype images
-
Last updated
Oct 11, 2023

/rice/oryzabase