Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | SCL30B |
| Gene Symbol Synonym | OsSCL30, Os-SCL30, SCL30, OsSCL30b, Os-SCL30b, RRM1-208, OsRRM1-208 |
| CGSNL Gene Name | SC35-LIKE PROTEIN 30B |
| Gene Name Synonym | SC35-like protein 30b, SCL subfamily protein 30b, RNA recognition motif domain protein 1-208 |
| Protein Name | SC35-LIKE PROTEIN 30B |
| Allele | scl30 |
| Chromosome No. | 12 |
| Explanation | AB110200. an SC35-like splicing factor. Os-SCL30 in Barta et al. 2010, Dong et al. 2018. TO:0020102: phosphate content. TO:0000975: grain width. GO:2000377: regulation of reactive oxygen species metabolic process. |
| Trait Class |
Vegetative organ - Culm
Seed - Morphological traits - Grain shape Tolerance and resistance - Stress tolerance Character as QTL - Yield and productivity |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK065531
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| MSU ID |
LOC_Os12g38420.1
LOC_Os12g38430.1 |
| RAP ID |
Os12g0572400 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
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INSD Accession List (Test version) |
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| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Jiang X., Yu S., Huang Y., Huang J., Liu S., Yang D., Fu J., He H., Fu H.
PeerJ 2024 12 e17668 Identification of the <i>RRM1</i> gene family in rice (<i>Oryza sativa</i>) and its response to rice blast.
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Zhang J., Sun Y., Zhou Z., Zhang Y., Yang Y., Zan X., Li X., Wan J., Gao X., Chen R., Huang Z., Li L., Xu Z.
Sci Rep 2022 12(1) 8385 OsSCL30 overexpression reduces the tolerance of rice seedlings to low temperature, drought and salt.
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Dong C., He F., Berkowitz O., Liu J., Cao P., Tang M., Shi H., Wang W., Li Q., Shen Z., Whelan J., Zheng L.
Plant Cell 2018 30(10) 2267-2285 Alternative Splicing Plays a Critical Role in Maintaining Mineral Nutrient Homeostasis in Rice (<i>Oryza sativa</i>).
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Barta A., Kalyna M., Reddy A.S.N.
Plant Cell 2010 22(9) 2926-2929 Implementing a rational and consistent nomenclature for serine/arginine-rich protein splicing factors (SR proteins) in plants.
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Isshiki M, Tsumoto A, Shimamoto K.
Plant Cell 2006 18(1) 146-58 The serine/arginine-rich protein family in rice plays important roles in constitutive and alternative splicing of pre-mRNA.
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Moriguchi,K., Suzuki,T., Ito,Y., Yamazaki,Y., Niwa,Y. and Kurata,N.
Plant Cell 2005 17(2) 389-403 Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations.
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
response to oxidative stress( GO:0006979 )
nuclear speck( GO:0016607 ) nucleic acid binding( GO:0003676 ) response to starvation( GO:0042594 ) response to abscisic acid stimulus( GO:0009737 ) response to heat( GO:0009408 ) nucleus( GO:0005634 ) response to salt stress( GO:0009651 ) response to water deprivation( GO:0009414 ) response to cold( GO:0009409 ) nucleotide binding( GO:0000166 ) |
| Trait Ontology |
cold tolerance( TO:0000303 )
drought tolerance( TO:0000276 ) salt tolerance( TO:0006001 ) heat tolerance( TO:0000259 ) abscisic acid sensitivity( TO:0000615 ) grain size( TO:0000397 ) grain length( TO:0000734 ) grain thickness( TO:0000399 ) 1000-seed weight( TO:0000382 ) glume color( TO:0000221 ) endosperm color( TO:0000487 ) plant height( TO:0000207 ) tiller number( TO:0000346 ) grain yield per plant( TO:0000449 ) spikelet fertility( TO:0000180 ) |
| Plant Ontology |
leaf( PO:0025034 )
leaf sheath( PO:0020104 ) |
| Related Strains | |
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| Phenotype images | |
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| Last updated | |
| Jan 14, 2025 | |
