Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | GATA18 |
| Gene Symbol Synonym | OsTIFY1A, TIFY1A, OsCCT13, OsGATA18, OsGATA18a, OsGATA18b |
| CGSNL Gene Name | GATA TRANSCRIPTION FACTOR 18 |
| Gene Name Synonym | TIFY GENE 1A, TIFY-DOMAIN PROTEIN 1A, CCT domain-containing gene 13, CCT (CO, CO-LIKE and TOC1) domain protein 13, CCT domain protein 13, GATA transcription factor 18, GATA factor 18 |
| Protein Name | GATA TRANSCRIPTION FACTOR 18 |
| Allele | |
| Chromosome No. | 3 |
| Explanation | LOC_Os03g47970.1 (OsGATA18a), LOC_Os03g47970.2 (OsGATA18b). Q10F25. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. |
| Trait Class |
Tolerance and resistance - Stress tolerance
Other |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK105025
|
| MSU ID |
LOC_Os03g47970.1
LOC_Os03g47970.2 |
| RAP ID |
Os03g0684000 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
- |
| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Zhang J., Fan X., Hu Y., Zhou X., He Q., Liang L., Xing Y.
J Integr Plant Biol 2020 Global analysis of CCT family knockout mutants identifies four genes involved in regulating heading date in rice.
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Gupta P., Nutan K.K., Singla-Pareek SL., Pareek A.
Front Plant Sci 2017 8 1944 Abiotic Stresses Cause Differential Regulation of Alternative Splice Forms of GATA Transcription Factor in Rice.
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Zhang L., Li Q., Dong H., He Q., Liang L., Tan C., Han Z., Yao W., Li G., Zhao H., Xie W., Xing Y.
Sci Rep 2015 5 7663 Three CCT domain-containing genes were identified to regulate heading date by candidate gene-based association mapping and transformation in rice.
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Ye H,Du H,Tang N,Li X,Xiong L
Plant Mol. Biol. 2009 71(3) 291-305 Identification and expression profiling analysis of TIFY family genes involved in stress and phytohormone responses in rice.
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José C Reyes, M Isabel Muro-Pastor, Francisco J Florencio
Plant Physiol. 2004 134(4) 1718-32 The GATA family of transcription factors in Arabidopsis and rice.
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
circadian rhythm( GO:0007623 )
chromatin binding( GO:0003682 ) nucleus( GO:0005634 ) transcription factor complex( GO:0005667 ) transcription from RNA polymerase II promoter( GO:0006366 ) zinc ion binding( GO:0008270 ) cell differentiation( GO:0030154 ) positive regulation of transcription from RNA polymerase II promoter( GO:0045944 ) response to abscisic acid stimulus( GO:0009737 ) response to water deprivation( GO:0009414 ) response to salt stress( GO:0009651 ) |
| Trait Ontology |
abscisic acid sensitivity( TO:0000615 )
drought tolerance( TO:0000276 ) salt tolerance( TO:0006001 ) |
| Plant Ontology | - |
| Related Strains | |
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| Phenotype images | |
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| Last updated | |
| Dec 28, 2021 | |
