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Basic Information
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CGSNL Gene Symbol
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_
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Gene Symbol Synonym
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OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7
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CGSNL Gene Name
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_
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Gene Name Synonym
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Phenylalanine ammonia-lyase 07
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Protein Name
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Allele
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Chromosome No.
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4
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Explanation
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similar to AtPAL1. OsPAL6 in Tonnessen et al. 2014, Zhou et al. 2018, Chen et al. 2018, Ke et al. 2019, Wu et al. 2019, Zhou et al. 2021, He et al. 2020, Sun et al. 2021, Wu et al. 2022, Yang et al. 2022, Wang et al. 2022, Ding et al. 2023, Sun et al. 2024, Liu et al. 2024, Liu et al. 2025, An et al. 2024, Shim et al. 2025. PAL1 in Schmitz et al. 2015. GO:1901141: regulation of lignin biosynthetic process. GO:1990169: stress response to copper ion. GO:1990170: stress response to cadmium ion.
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Trait Class
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Biochemical character
Vegetative organ - Leaf
Reproductive organ - panicle
Reproductive organ - Pollination, fertilization, fertility
Coloration - Anthocyanin
Tolerance and resistance - Disease resistance
Tolerance and resistance - Insect resistance
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK067801
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MSU ID
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LOC_Os04g43800.1
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RAP ID
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Os04g0518400
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
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Build5
)
RAP-DB
(
IRGSP 1.0
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Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Shim Y., Kim B., Choi Y., Cho S.H., Kim Y., Kim S.H., Yim Y., Kang K., Paek N.C.
Plant J. 2025 121(1) e17175
Rice OsDof12 enhances tolerance to drought stress by activating the phenylpropanoid pathway.
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Wang C., Zhao H., Zhou Y., Zhang H., Chen X., Liang W., Zheng H., Hou F., Zhang J., Xie L., Zhao M., Zheng B., Li J.
Front Plant Sci 2025 16 1584423
Genome-wide transcriptome analysis reveal the molecular mechanism for triggering the formation of purple leaves in rice mutants <i>nip-lpl</i> and <i>nip-dpl</i>.
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Liu D., He J., Li Q., Zhang X., Wang Y., Sun Q., Wang W., Zhang M., Wang Y., Xu H., Fang L., Jiang L., Liu S., Chen L., Tian Y., Liu X., Wang R., Zhang Z., Chern M., Dong X., Wang H., Liu Y., Ronald P.C., Wan J.
Proc. Natl. Acad. Sci. U.S.A. 2025 122(10) e2411164122
A WRKY transcription factor confers broad-spectrum resistance to biotic stresses and yield stability in rice.
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Plant Cell Environ. 2024 47(9) 3668
Correction to 'OsJRL negatively regulates rice cold tolerance via interfering phenylalanine metabolism and flavonoid biosynthesis'.
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An Z., Yang Z., Zhou Y., Huo S., Zhang S., Wu D., Shu X., Wang Y.
Plant Cell Environ. 2024
OsJRL negatively regulates rice cold tolerance via interfering phenylalanine metabolism and flavonoid biosynthesis.
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Sun B., Shen Y., Zhu L., Yang X., Liu X., Li D., Zhu M., Miao X., Shi Z.
BMC Biol. 2024 22(1) 68
OsmiR319-OsPCF5 modulate resistance to brown planthopper in rice through association with MYB proteins.
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Li L.L., Xiao Y., Wang B., Zhuang Y., Chen Y., Lu J., Lou Y., Li R.
Proc. Natl. Acad. Sci. U.S.A. 2024 121(52) e2413564121
A frameshift mutation in <i>JAZ10</i> resolves the growth versus defense dilemma in rice.
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Liu H., Zhang J., Wang J., Fan Z., Qu X., Yan M., Zhang C., Yang K., Zou J., Le J.
Plant Cell 2024 36(11) 4768-4785
The rice R2R3 MYB transcription factor FOUR LIPS connects brassinosteroid signaling to lignin deposition and leaf angle.
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Ding Y., Zhang F., Sun F., Liu J., Zhu Z., He X., Bai G., Ni Z., Sun Q., Su Z.
Plant Biotechnol. J. 2023 21(8) 1516-1518
Loss of OsHRC function confers blast resistance without yield penalty in rice.
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Yang X., Gu X., Ding J., Yao L., Gao X., Zhang M., Meng Q., Wei S., Fu J.
BMC Genomics 2022 23(1) 278
Gene expression analysis of resistant and susceptible rice cultivars to sheath blight after inoculation with Rhizoctonia solani.
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Gu S., Zhuang J., Zhang Z., Chen W., Xu H., Zhao M., Ma D.
Front Plant Sci 2022 13 1110724
Multi-omics approach reveals the contribution of <i>OsSEH1</i> to rice cold tolerance.
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ShangGuan X., Qi Y., Wang A., Ren Y., Wang Y., Xiao T., Shen Z., Wang Q., Xia Y.
Front Plant Sci 2022 13 1078113
OsGLP participates in the regulation of lignin synthesis and deposition in rice against copper and cadmium toxicity.
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Wang R., You X., Zhang C., Fang H., Wang M., Zhang F., Kang H., Xu X., Liu Z., Wang J., Zhao Q., Wang X., Hao Z., He F., Tao H., Wang D., Wang J., Fang L., Qin M., Zhao T., Zhang P., Xing H., Xiao Y., Liu W., Xie Q., Wang G.L., Ning Y.
Genome Biol. 2022 23(1) 154
An ORFeome of rice E3 ubiquitin ligases for global analysis of the ubiquitination interactome.
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Wu D., Guo J., Zhang Q., Shi S., Guan W., Zhou C., Chen R., Du B., Zhu L., He G.
New Phytol. 2022 234(3) 1031-1046
Necessity of rice resistance to planthoppers for OsEXO70H3 regulating SAMSL excretion and lignin deposition in cell walls.
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Zhou D., Shen W., Cui Y., Liu Y., Zheng X., Li Y., Wu M., Fang S., Liu C., Tang M., Yi Y., Zhao M., Chen L.
Front Plant Sci 2021 12 636877
APICAL SPIKELET ABORTION (ASA) Controls Apical Panicle Development in Rice by Regulating Salicylic Acid Biosynthesis.
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Xu R., Pan R., Zhang Y., Feng Y., Nath U.K., Gan Y., Shi C., Akhter D.
Int J Mol Sci 2021 22(18)
RNA-Seq-Based Profiling of <i>pl</i> Mutant Reveals Transcriptional Regulation of Anthocyanin Biosynthesis in Rice (<i>Oryza sativa</i> L.).
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Sun J., Song W., Chang Y., Wang Y., Lu T., Zhang Z.
Front Plant Sci 2021 12 814465
OsLMP1, Encoding a Deubiquitinase, Regulates the Immune Response in Rice.
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He J., Liu Y., Yuan D., Duan M., Liu Y., Shen Z., Yang C., Qiu Z., Liu D., Wen P., Huang J., Fan D., Xiao S., Xin Y., Chen X., Jiang L., Wang H., Yuan L., Wan J.
Proc. Natl. Acad. Sci. U.S.A. 2020 117(1) 271-277
An R2R3 MYB transcription factor confers brown planthopper resistance by regulating the phenylalanine ammonia-lyase pathway in rice.
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Wu T., Peng C., Li B., Wu W., Kong L., Li F., Chu Z., Liu F., Ding X.
Rice (N Y) 2019 12(1) 90
OsPGIP1-Mediated Resistance to Bacterial Leaf Streak in Rice is Beyond Responsive to the Polygalacturonase of Xanthomonas oryzae pv. oryzicola.
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Ke S., Luan X., Liang J., Hung Y.H., Hsieh T.F., Zhang X.Q.
Plant Mol. Biol. 2019 100(1-2) 151-161
Rice OsPEX1, an extensin-like protein, affects lignin biosynthesis and plant growth.
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Zhou X., Liao H., Chern M., Yin J., Chen Y., Wang J., Zhu X., Chen Z., Yuan C., Zhao W., Wang J., Li W., He M., Ma B., Wang J., Qin P., Chen W., Wang Y., Liu J., Qian Y., Wang W., Wu X., Li P., Zhu L., Li S., Ronald P.C., Chen X.
Proc. Natl. Acad. Sci. U.S.A. 2018 115(12) 3174-3179
Loss of function of a rice TPR-domain RNA-binding protein confers broad-spectrum disease resistance.
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Chen Z., Chen T., Sathe A.P., He Y., Zhang X.B., Wu J.L.
Int J Mol Sci 2018 19(12)
Identification of a Novel Semi-Dominant Spotted-Leaf Mutant with Enhanced Resistance to <i>Xanthomonas</i><i>oryzae</i> pv. <i>oryzae</i> in Rice.
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Yang X., Gong P., Li K., Huang F., Cheng F., Pan G.
J. Exp. Bot. 2016 67(9) 2761-76
A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.
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Zhao S., Zhao L., Liu F., Wu Y., Zhu Z., Sun C., Tan L.
J Integr Plant Biol 2016 58(12) 983-996
NARROW AND ROLLED LEAF 2 regulates leaf shape, male fertility, and seed size in rice.
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Lee D.K., Jung H., Jang G., Jeong J.S., Kim Y.S., Ha S.H., Do Choi Y., Kim J.K.
Plant Physiol. 2016 172(1) 575-88
Overexpression of the OsERF71 Transcription Factor Alters Rice Root Structure and Drought Resistance.
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Schmitz A.J., Begcy K., Sarath G., Walia H.
Plant Sci. 2015 241 177-88
Rice Ovate Family Protein 2 (OFP2) alters hormonal homeostasis and vasculature development.
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Duan L., Liu H., Li X., Xiao J., Wang S.
Physiol Plant 2014
Multiple phytohormones and phytoalexins are involved in disease resistance to Magnaporthe oryzae invaded from roots in rice.
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Tonnessen B.W., Manosalva P., Lang J.M., Baraoidan M., Bordeos A., Mauleon R., Oard J., Hulbert S., Leung H., Leach J.E.
Plant Mol. Biol. 2014
Rice phenylalanine ammonia-lyase gene OsPAL4 is associated with broad spectrum disease resistance.
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Wu Z., Gui S., Wang S., Ding Y.
BMC Evol. Biol. 2014 14 100
Molecular evolution and functional characterisation of an ancient phenylalanine ammonia-lyase gene (NnPAL1) from Nelumbo nucifera: novel insight into the evolution of the PAL family in angiosperms.
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Rawal H.C., Singh N.K., Sharma T.R.
International Journal of Genomics 2013 2013 678969
Conservation, divergence, and genome-wide distribution of PAL and POX A gene families in plants
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Ogo Y., Ozawa K., Ishimaru T., Murayama T., Takaiwa F.
Plant Biotechnol. J. 2013 11(6) 734-46
Transgenic rice seed synthesizing diverse flavonoids at high levels: a new platform for flavonoid production with associated health benefits.
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Giberti S., Bertea C.M., Narayana R., Maffei M.E., Forlani G.
J. Plant Physiol. 2012 169(3) 249-54
Two phenylalanine ammonia lyase isoforms are involved in the elicitor-induced response of rice to the fungal pathogen Magnaporthe oryzae.
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Lin YZ,Chen HY,Kao R,Chang SP,Chang SJ,Lai EM
Phytochemistry 2008 69 715-28
Proteomic analysis of rice defense response induced by probenazole.
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Sudo E., Itouga M., Kayo Yoshida-Hatanaka, Ono Y., Sakakibara H.
J. Exp. Bot. 2008 59(12) 3465-74
Gene expression and sensitivity in response to copper stress in rice leaves.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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cytoplasm( GO:0005737 )
L-phenylalanine catabolic process( GO:0006559 )
cinnamic acid biosynthetic process( GO:0009800 )
defense response( GO:0006952 )
defense response to fungus( GO:0050832 )
response to copper ion( GO:0046688 )
phenylalanine ammonia-lyase activity( GO:0045548 )
inflorescence development( GO:0010229 )
salicylic acid biosynthetic process( GO:0009697 )
regulation of salicylic acid biosynthetic process( GO:0080142 )
defense response to insect( GO:0002213 )
lignin biosynthetic process( GO:0009809 )
response to fungus( GO:0009620 )
anthocyanin biosynthetic process( GO:0009718 )
response to cadmium ion( GO:0046686 )
defense response to bacterium( GO:0042742 )
phenylpropanoid metabolic process( GO:0009698 )
response to water deprivation( GO:0009414 )
phenylpropanoid biosynthetic process( GO:0009699 )
brassinosteroid mediated signaling( GO:0009742 )
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Trait Ontology
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copper sensitivity( TO:0000021 )
hydrogen peroxide content( TO:0000605 )
blast disease( TO:0000074 )
pollen fertility( TO:0000421 )
inflorescence development trait( TO:0000621 )
brown planthopper resistance( TO:0000424 )
plant height( TO:0000207 )
leaf color( TO:0000326 )
sheath blight disease resistance( TO:0000255 )
white-backed planthopper resistance( TO:0000205 )
insect damage resistance( TO:0000261 )
bacterial blight disease resistance( TO:0000175 )
lignin content( TO:0000731 )
anthocyanin content( TO:0000071 )
drought tolerance( TO:0000276 )
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Plant Ontology
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inflorescence development stage( PO:0001083 )
stem( PO:0009047 )
leaf sheath( PO:0020104 )
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Related Strains
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Phenotype images
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Last updated
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Mar 21, 2026
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Update info.