Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol UBQ5
Gene Symbol Synonym RPS27a, OsUBQ5, OsRPS27a
CGSNL Gene Name UBIQUITIN 5
Gene Name Synonym Ubiquitin 5, Monoubiquitin-tail protein 1, ribosomal protein S27, ribosomal protein small subunit 27
Protein Name UBIQUITIN 5
Allele
Chromosome No. 1
Explanation Q9ARZ9 (Cleaved into the following 2 chains:Ubiquitin and 40S ribosomal protein S27a-1) (by UniProt). D15997. Monoubiquitin-tail protein 1 in Sasaki et al. 1994.
Trait Class Biochemical character
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Other
Expression
Sequence/Locus
cDNA Accession No. AK061988
MSU ID LOC_Os01g22490.1
RAP ID Os01g0328400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Bakshi A., Moin M., Gayatri M.B., Reddy A.B.M., Datla R., Madhav M.S., Kirti P.B.
Plants (Basel) 2023  12(1) 
Involvement of Target of Rapamycin (TOR) Signaling in the Regulation of Crosstalk between Ribosomal Protein Small Subunit 6 Kinase-1 (RPS6K-1) and Ribosomal Proteins.
Auler P.A., Benitez L.C., do Amaral MN., Vighi I.L., Rodrigues G.S., da Maia LC., Braga E.J.B.
Genet. Mol. Res. 2017  16(2) 
Selection of candidate reference genes and validation for real-time PCR studies in rice plants exposed to low temperatures.
Saha A., Das S., Moin M., Dutta M., Bakshi A., Madhav M.S., Kirti P.B.
Front Plant Sci 2017  8  1553
Genome-Wide Identification and Comprehensive Expression Profiling of Ribosomal Protein Small Subunit (RPS) Genes and their Comparative Analysis with the Large Subunit (RPL) Genes in Rice.
Moin M., Bakshi A., Madhav M.S., Kirti P.B.
Front Chem 2017  5  97
Expression Profiling of Ribosomal Protein Gene Family in Dehydration Stress Responses and Characterization of Transgenic Rice Plants Overexpressing <i>RPL23A</i> for Water-Use Efficiency and Tolerance to Drought and Salt Stresses.
Jain M, Nijhawan A, Tyagi AK, Khurana JP.
Biochem. Biophys. Res. Commun. 2006  345(2)  646-51
Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR.
Sasaki,T., Song,J., Koga-Ban,Y., Matsui,E., Fang,F., Higo,H., Nagasaki,H., Hori,M., Miya,M. and Murayama-Kayano,E.
Plant J. 1994  6(4)  615-624
Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library.
DB Reference
Gramene ID -
Ontologies
Gene Ontology structural constituent of ribosome( GO:0003735 )
nucleus( GO:0005634 )
Golgi apparatus( GO:0005794 )
plasma membrane( GO:0005886 )
translation( GO:0006412 )
plasmodesma( GO:0009506 )
cytosolic small ribosomal subunit( GO:0022627 )
metal ion binding( GO:0046872 )
response to oxidative stress( GO:0006979 )
response to water deprivation( GO:0009414 )
response to salt stress( GO:0009651 )
response to abscisic acid stimulus( GO:0009737 )
defense response to bacterium( GO:0042742 )
defense response to fungus( GO:0050832 )
Trait Ontology abscisic acid sensitivity( TO:0000615 )
drought tolerance( TO:0000276 )
salt tolerance( TO:0006001 )
oxidative stress( TO:0002657 )
bacterial blight disease resistance( TO:0000175 )
sheath blight disease resistance( TO:0000255 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Jun 27, 2023

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