遺伝子 - 詳細

詳細 - 遺伝子

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Basic Information
CGSNL 遺伝子シンボル GW5
遺伝子シンボルシノニム qSW5/GW5, GSE5, OsGSE5, OsGW5, qSW5
CGSNL 遺伝子名 GRAIN WIDTH 5
遺伝子名シノニム GRAIN SIZE ON CHROMOSOME 5, seed width (QTL)-5
タンパク質名
対立遺伝子 gse5-cr
染色体番号 5
解説 AB433345(Kasalath), Map position (5.35Mb). a Plasma Membrane-Associated Protein with IQ Domains. the Candidate Gene of qDEC5. PRJNA751381.
形質クラス 種子 - 形態学的な特色 - 粒形
QTLの特性 - 粒品質
QTLの特性 - 収穫と生産性
発現
Sequence/Locus
cDNA Accession No. -
MSU ID LOC_Os05g09520.1
RAP ID Os05g0187500
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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マップ
位置情報(cM)
リンケージマップ Classical linkage map
文献
Gu Z., Gong J., Zhu Z., Li Z., Feng Q., Wang C., Zhao Y., Zhan Q., Zhou C., Wang A., Huang T., Zhang L., Tian Q., Fan D., Lu Y., Zhao Q., Huang X., Yang S., Han B.
Nat. Genet. 2023  55(10)  1745-1756
Structure and function of rice hybrid genomes reveal genetic basis and optimal performance of heterosis.
Jiang L., Zhong H., Jiang X., Zhang J., Huang R., Liao F., Deng Y., Liu Q., Huang Y., Wang H., Tao Y., Zheng J.
Front Plant Sci 2021  12  814928
Identification and Pleiotropic Effect Analysis of <i>GSE5</i> on Rice Chalkiness and grain shape.
Kumar A., Daware A., Kumar A., Kumar V., Gopala Krishnan S., Mondal S., Patra B.C., Singh A.K., Tyagi A.K., Parida S.K., Thakur J.K.
Plant J. 2020   
Genome-wide analysis of polymorphisms identified domestication-associated long low-diversity region carrying important rice grain size/weight quantitative trait loci.
Wang W., Mauleon R., Hu Z., Chebotarov D., Tai S., Wu Z., Li M., Zheng T., Fuentes R.R., Zhang F., Mansueto L., Copetti D., Sanciangco M., Palis K.C., Xu J., Sun C., Fu B., Zhang H., Gao Y., Zhao X., Shen F., Cui X., Yu H., Li Z., Chen M., Detras J., Zhou Y., Zhang X., Zhao Y., Kudrna D., Wang C., Li R., Jia B., Lu J., He X., Dong Z., Xu J., Li Y., Wang M., Shi J., Li J., Zhang D., Lee S., Hu W., Poliakov A., Dubchak I., Ulat V.J., Borja F.N., Mendoza J.R., Ali J., Li J., Gao Q., Niu Y., Yue Z., Naredo M.E.B., Talag J., Wang X., Li J., Fang X., Yin Y., Glaszmann J.C., Zhang J., Li J., Hamilton R.S., Wing R.A., Ruan J., Zhang G., Wei C., Alexandrov N., McNally K.L., Li Z., Leung H.
Nature 2018  557(7703)  43-49
Genomic variation in 3,010 diverse accessions of Asian cultivated rice.
Duan P., Xu J., Zeng D., Zhang B., Geng M., Zhang G., Huang K., Huang L., Xu R., Ge S., Qian Q., Li Y.
Mol Plant 2017  10(5)  685-694
Natural Variation in the Promoter of GSE5 Contributes to grain size Diversity in Rice.
Du Y., He W., Deng C., Chen X., Gou L., Zhu F., Guo W., Zhang J., Wang T.
PLoS ONE 2016  11(3)  e0150458
Flowering-Related RING Protein 1 (FRRP1) Regulates flowering time and Yield Potential by Affecting histone H2B Monoubiquitination in Rice (Oryza Sativa).
Xia K., Ou X., Tang H., Wang R., Wu P., Jia Y., Wei X., Xu X., Kang S.H., Kim S.K., Zhang M.
New Phytol. 2015   
Rice microRNA osa-miR1848 targets the obtusifoliol 14alpha-demethylase gene OsCYP51G3 and mediates the biosynthesis of phytosterols and brassinosteroids during development and in response to stress.
Ikeda M., Miura K., Aya K., Kitano H., Matsuoka M.
Curr. Opin. Plant Biol. 2013  16(2)  213-20
Genes offering the potential for designing yield-related traits in rice.
Miura K., Ashikari M., Matsuoka M.
Trends Plant Sci. 2011  16(6)  319-26
The role of QTLs in the breeding of high-yielding rice.
Li,Y., Fan,C., Xing,Y., Jiang,Y., Luo,L., Sun,L., Shao,D., Xu,C., Li,X., Xiao,J., He,Y. and Zhang,Q.
Nat. Genet. 2011  43(12)  1266-1269
Natural variation in GS5 plays an important role in regulating grain size and yield in rice
Shomura,A., Izawa,T., Ebana,K., Ebitani,T., Kanegae,H., Konishi,S. and Yano,M.
Nat Genet 2008  40(8)  1023-1028
Deletion in a gene associated with grain size increased yields during rice domestication
Weng,J., Gu,S., Wan,X., Gao,H., Guo,T., Su,N., Lei,C., Zhang,X., Cheng,Z., Guo,X., Wang,J., Jiang,L., Zhai,H. and Wan,J.
Cell Res. 2008  18(12)  1199-1209
Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight
Konishi S,Ebana K,Izawa T
Plant Cell Physiol. 2008  49  1283-93
Inference of the japonica rice domestication process from the distribution of six functional nucleotide polymorphisms of domestication-related genes in various landraces and modern cultivars.
TextPresso Search Search textpresso for GW5 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
オントロジー
Gene Ontology regulation of protein metabolic process( GO:0051246 )
regulation of carbohydrate metabolic process( GO:0006109 )
amino sugar metabolic process( GO:0006040 )
nucleotide-sugar metabolic process( GO:0009225 )
response to heat( GO:0009408 )
plasma membrane( GO:0005886 )
inflorescence development( GO:0010229 )
calcium-mediated signaling( GO:0019722 )
regulation of cell proliferation( GO:0042127 )
seed development( GO:0048316 )
Trait Ontology grain width( TO:0000402 )
grain weight( TO:0000590 )
grain size( TO:0000397 )
seed development trait( TO:0000653 )
inflorescence development trait( TO:0000621 )
seed size( TO:0000391 )
chalky endosperm( TO:0000266 )
grain shape( TO:0002730 )
yield trait( TO:0000371 )
seed quality( TO:0000162 )
grain length( TO:0000734 )
heat tolerance( TO:0000259 )
temperature response trait( TO:0000432 )
Plant Ontology inflorescence( PO:0009049 )
seed development stage( PO:0001170 )
inflorescence development stage( PO:0001083 )
関連系統
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形質画像
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更新日
2024-01-17 14:35:49.805


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