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Basic Information
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CGSNL Gene Symbol
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_
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Gene Symbol Synonym
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OsMYB55/61, OsMYB55, MYB55, OsMYB61, MYB61, OsMYB61a, MYB61a, Os2R_MYB5, 2R_MYB5 , MYB2-6, OsMYB2-6
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CGSNL Gene Name
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_
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Gene Name Synonym
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myb transcription factor 55/61, transcription factor MYB55/61, R2R3-MYB Transcription Factor 5, R2R3-MYB transcription factor 2-6
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Protein Name
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Allele
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myb61a, myb61a-1, myb61
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Chromosome No.
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1
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Explanation
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MYB61 in Huang et al. 2015, Ye et al. 2018, Wang et al. 2019, Yu et al. 2019, He et al. 2020, Naithani et al. 2023, Cao et al. 2023, Chen et al. 2025. a CESA regulator. GO:2001006: regulation of cellulose biosynthetic process. GO:0099402: plant organ development. GO:1901348: positive regulation of secondary cell wall biogenesis. TO:0000993: cellulose content. GO:2001008: positive regulation of cellulose biosynthetic process.
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Trait Class
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Seed - Morphological traits - Endosperm
Seed - Morphological traits - Grain shape
Tolerance and resistance - Stress tolerance
Character as QTL - Grain quality
Character as QTL - Germination
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK111803
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MSU ID
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LOC_Os01g18240.1
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RAP ID
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Os01g0285300
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Peng W., Zhang Y., Xie H., Yu Y., Zhu M.
Front Plant Sci 2025 16 1668800
Research progress on the synergistic regulation of MYB transcription factor-mediated developmental plasticity and stress responses in rice.
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Chen Y., Hui S., Li H., Jiao G., Cao R., Zhou L., Wang J., Mawia A.M., Yang L., Wu Y., Zhang Y., Sheng Z., Shao G., Zhao F., Wang L., Lyu Y., Tang S., Hu S., Hu P.
Plant Biotechnol. J. 2025 23(7) 2793-2808
A myb61-SWB9-KOs module regulates grain chalkiness via gibberellin biosynthesis in rice endosperm.
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Zhang H.C., Gong Y.H., Tao T., Lu S., Zhou W.Y., Xia H., Zhang X.Y., Yang Q.Q., Zhang M.Q., Hong L.M., Guo Q.Q., Ren X.Z., Yang Z.D., Cai X.L., Ren D.Y., Gao J.P., Jin S.K., Leng Y.J.
BMC Genomics 2024 25(1) 797
Genome-wide identification of R2R3-MYB transcription factor subfamily genes involved in salt stress in rice (Oryza sativa L.).
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Naithani S., Mohanty B., Elser J., D'Eustachio P., Jaiswal P.
Plants (Basel) 2023 12(11)
Biocuration of a Transcription Factors Network Involved in Submergence Tolerance during Seed Germination and Coleoptile Elongation in Rice (<i>Oryza sativa</i>).
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Chen Y., Qi H., Yang L., Xu L., Wang J., Guo J., Zhang L., Tan Y., Pan R., Shu Q., Qian Q., Song S.
Cell Rep 2023 42(7) 112702
The OsbHLH002/OsICE1-OSH1 module orchestrates secondary cell wall formation in rice.
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Cao S., Wang Y., Gao Y., Xu R., Ma J., Xu Z., Shang-Guan K., Zhang B., Zhou Y.
Mol Plant 2023 16(6) 999-1015
The RLCK-VND6 module coordinates secondary cell wall formation and adaptive growth in rice.
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Kang L., Teng Y., Cen Q., Fang Y., Tian Q., Zhang X., Wang H., Zhang X., Xue D.
Plants (Basel) 2022 11(15)
Genome-Wide Identification of R2R3-MYB Transcription Factor and Expression Analysis under Abiotic Stress in Rice.
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He L., Chen X., Yang J., Zhang T., Li J., Zhang S., Zhong K., Zhang H., Chen J., Yang J.
New Phytol. 2020 225(2) 896-912
Rice black-streaked dwarf virus-encoded P5-1 regulates the ubiquitination activity of SCF E3 ligases and inhibits jasmonate signaling to benefit its infection in rice.
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Yu Y.
Plant Physiol. 2019 181(2) 385-386
OsKNAT7 Bridges Secondary Cell Wall Formation and Cell Growth Regulation.
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Wang S., Yang H., Mei J., Liu X., Wen Z., Zhang L., Xu Z., Zhang B., Zhou Y.
Plant Physiol. 2019 181(2) 669-682
Rice Homeobox Protein KNAT7 Integrates the Pathways Regulating Cell Expansion and Wall Stiffness.
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Zhao K., Lin F., Romero-Gamboa SP., Saha P., Goh H.J., An G., Jung K.H., Hazen S.P., Bartley L.E.
Front Plant Sci 2019 10 1275
Rice Genome-Scale Network Integration Reveals Transcriptional Regulators of Grass Cell Wall Synthesis.
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Ye Y., Wu K., Chen J., Liu Q., Wu Y., Liu B., Fu X.
Rice (N Y) 2018 11(1) 36
OsSND2, a NAC family transcription factor, is involved in secondary cell wall biosynthesis through regulating MYBs expression in rice.
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Noda S., Koshiba T., Hattori T., Yamaguchi M., Suzuki S., Umezawa T.
Planta 2015 242(3) 589-600
The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
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Huang D., Wang S., Zhang B., Shang-Guan K., Shi Y., Zhang D., Liu X., Wu K., Xu Z., Fu X., Zhou Y.
Plant Cell 2015 27(6) 1681-96
A Gibberellin-Mediated DELLA-NAC Signaling Cascade Regulates Cellulose Synthesis in Rice.
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Hirano K., Kondo M., Aya K., Miyao A., Sato Y., Antonio B.A., Namiki N., Nagamura Y., Matsuoka M.
Plant Cell Physiol. 2013 54(11) 1791-802
Identification of transcription factors involved in rice secondary cell wall formation.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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amylopectin biosynthetic process( GO:0010021 )
gibberellic acid mediated signaling( GO:0009740 )
regulation of gibberellin biosynthetic process( GO:0010371 )
response to gibberellin stimulus( GO:0009739 )
cellulose biosynthetic process( GO:0030244 )
cell wall thickening( GO:0052386 )
plant-type cell wall organization( GO:0009664 )
secondary cell wall biogenesis( GO:0009834 )
seed germination( GO:0009845 )
response to flooding( GO:0009413 )
DNA binding( GO:0003677 )
chromatin binding( GO:0003682 )
nucleus( GO:0005634 )
plant-type cell wall biogenesis( GO:0009832 )
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Trait Ontology
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submergence tolerance( TO:0000524 )
chalky endosperm( TO:0000266 )
gibberellic acid sensitivity( TO:0000166 )
amylopectin content( TO:0000097 )
endosperm color( TO:0000487 )
grain weight( TO:0000590 )
grain length( TO:0000734 )
grain thickness( TO:0000399 )
1000-seed weight( TO:0000382 )
endosperm storage protein content( TO:0002653 )
total soluble sugar content( TO:0000340 )
amylose content( TO:0000196 )
gel consistency( TO:0000211 )
gelatinization temperature( TO:0000462 )
hot paste viscosity( TO:0000408 )
cool paste viscosity( TO:0000379 )
peak viscosity( TO:0000409 )
setback viscosity( TO:0000412 )
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Plant Ontology
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0 seed germination stage( PO:0007057 )
coleoptile emergence stage( PO:0007045 )
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Related Strains
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Phenotype images
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Last updated
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Jan 12, 2026
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Update info.