Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol _
Gene Symbol Synonym petB
CGSNL Gene Name _
Gene Name Synonym cytochrome B6, chloroplast apocytochrome b6
Protein Name
Allele
Chromosome No. Pt
Explanation LOC_Osp1g00640. X15901: CAA33977 (Japonica Group chloroplast genome). P12123. FJ908368-FJ908382 (wild rice species). M35995. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).
Trait Class Biochemical character
Expression
Sequence/Locus
cDNA Accession No. -
RAP ID -
Links Organelle Genome
INSD Accession List
(Test version)
-
Map
Locate(cM)
References
Xiao H., Xu Y., Ni C., Zhang Q., Zhong F., Huang J., Liu W., Peng L., Zhu Y., Hu J.
J. Exp. Bot. 2018  69(12)  2923-2936
A rice dual-localized pentatricopeptide repeat protein is involved in organellar RNA editing together with OsMORFs.
Zhang,T., Hu,S., Zhang,G., Pan,L., Zhang,X., Al-Mssallem,I.S. and Yu,J.
PLoS ONE 2012  7 (7)  E42041
The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins
Tang,L., Zou,X.H., Achoundong,G., Potgieter,C., Second,G., Zhang,D.Y. and Ge,S.
Mol. Phylogenet. Evol. 2010  54(1)  266-277
Phylogeny and biogeography of the rice tribe (Oryzeae): evidence from combined analysis of 20 chloroplast fragments
Masood,M.S., Nishikawa,T., Fukuoka,S., Njenga,P.K., Tsudzuki,T. and Kadowaki,K.
Gene 2004  340(1)  133-139
The complete nucleotide sequence of wild rice (Oryza nivara) chloroplast genome: first genome wide comparative sequence analysis of wild and cultivated rice
Nakazono,M. and Hirai,A.
Mol. Gen. Genet. 1993  236(2-3)  341-346
Identification of the entire set of transferred chloroplast DNA sequences in the mitochondrial genome of rice
Shimada,H. and Sugiura,M.
Nucleic Acids Res. 1991  19(5)  983-995
Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes
Hiratsuka,J., Shimada,H., Whittier,R., Ishibashi,T., Sakamoto,M., Mori,M., Kondo,C., Honji,Y., Sun,C.R. and Meng,B.Y.
Mol. Gen. Genet. 1989  217(2-3)  185-194
The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of cereals
Cote,J.-C., Wu,N.-H. and Wu,R.
Plant Mol. Biol. 1988  11  873-874
Nucleotide sequence of the rice chloroplast apocytochrome b6 gene (petB)
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DB Reference
Gramene ID -
Ontologies
Gene Ontology iron ion binding( GO:0005506 )
electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity( GO:0045158 )
respiratory electron transport chain( GO:0022904 )
heme binding( GO:0020037 )
oxidoreductase activity( GO:0016491 )
integral to membrane( GO:0016021 )
photosynthesis( GO:0015979 )
plastid( GO:0009536 )
chloroplast thylakoid membrane( GO:0009535 )
Trait Ontology -
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Jan 30, 2019


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