Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol _
Gene Symbol Synonym trnF(GAA), trnF, trnF-GAA
CGSNL Gene Name _
Gene Name Synonym tRNA-Phe, transfer RNA phenylalanine, Phe-tRNA(GAA)
Protein Name
Allele
Chromosome No. Pt
Explanation X15901 (Japonica Group chloroplast genome). AF520764-AF520771 (wild rice species). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). EF137577 (partial sequence).
Trait Class
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID -
RAP ID -
Links Organelle Genome
INSD Accession List
(Test version) 		-
Map
Locate(cM)
References
Zhang,T., Hu,S., Zhang,G., Pan,L., Zhang,X., Al-Mssallem,I.S. and Yu,J.
PLoS ONE 2012  7 (7)  E42041
The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins
Kumagai,M., Wang,L. and Ueda,S.
Gene 2010  462(1-2)  44-51
Genetic diversity and evolutionary relationships in genus Oryza revealed by using highly variable regions of chloroplast DNA
Bouchenak-Khelladi,Y., Verboom,G.A., Hodkinson,T.R., Salamin,N., Francois,O., van der Bank,M., Chonghaile,G.N. and Savolainen,V.
Glob Chang Biol 2009  15(10)  2397 2417
The origins and diversification of C4 grasses and savanna- adapted ungulates
Bao,Y. and Ge,S.
Plant Syst. Evol. 2004  249(1-2)  55-66
Origin and phylogeny of Oryza species with the CD genome based on multiple-gene sequence data
Masood,M.S., Nishikawa,T., Fukuoka,S., Njenga,P.K., Tsudzuki,T. and Kadowaki,K.
Gene 2004  340(1)  133-139
The complete nucleotide sequence of wild rice (Oryza nivara) chloroplast genome: first genome wide comparative sequence analysis of wild and cultivated rice
Nakazono,M. and Hirai,A.
Mol. Gen. Genet. 1993  236(2-3)  341-346
Identification of the entire set of transferred chloroplast DNA sequences in the mitochondrial genome of rice
Shimada,H. and Sugiura,M.
Nucleic Acids Res. 1991  19(5)  983-995
Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes
Hiratsuka,J., Shimada,H., Whittier,R., Ishibashi,T., Sakamoto,M., Mori,M., Kondo,C., Honji,Y., Sun,C.R. and Meng,B.Y.
Mol. Gen. Genet. 1989  217(2-3)  185-194
The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of cereals
DB Reference
Gramene ID -
Ontologies
Gene Ontology -
Trait Ontology -
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Nov 26, 2015

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