Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol YCF3
Gene Symbol Synonym ORF170, ycf3, IRF170, ycf3-1, ycf3-2
CGSNL Gene Name PHOTOSYSTEM I ASSEMBLY PROTEIN YCF3
Gene Name Synonym Ycf3 protein, photosystem I assembly protein Ycf3, hypothetical chloroplast RF34
Protein Name PHOTOSYSTEM I ASSEMBLY PROTEIN YCF3
Allele
Chromosome No. Pt
Explanation LOC_Osp1g00350. X15901: CAA33997 (Japonica Group chloroplast genome). P12203. FJ908673-FJ908687 (wild rice species). IRF = an introncontaining reading frame (Shimada and Sugiura 1991). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).
Trait Class
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID LOC_Osp1g00350
RAP ID -
Links Organelle Genome
INSD Accession List
(Test version) 		-
Map
Locate(cM)
References
Wang Y., Yang Z., Zhang M., Ai P.
BMC Plant Biol. 2022  22(1)  437
A chloroplast-localized pentatricopeptide repeat protein involved in RNA editing and splicing and its effects on chloroplast development in rice.
Lv J., Shang L., Chen Y., Han Y., Yang X., Xie S., Bai W., Hu M., Wu H., Lei K., Ya'nan Yang, Ge S., Hai Phuong Trinh, Zhang Y., Guo L., Wang Z.
Rice (N Y) 2020  13(1)  25
OsSLC1 Encodes a Pentatricopeptide Repeat Protein Essential for Early Chloroplast Development and Seedling Survival.
Tang J., Zhang W., Wen K., Chen G., Sun J., Tian Y., Tang W., Yu J., An H., Wu T., Kong F., Terzaghi W., Wang C., Wan J.
Plant Mol. Biol. 2017   
OsPPR6, a pentatricopeptide repeat protein involved in editing and splicing chloroplast RNA, is required for chloroplast biogenesis in rice.
Zhang,T., Hu,S., Zhang,G., Pan,L., Zhang,X., Al-Mssallem,I.S. and Yu,J.
PLoS ONE 2012  7 (7)  E42041
The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins
Ye,J.W., Gong,Z.Y., Chen,C.G., Mi,H.L. and Chen,G.Y.
J Integr Plant Biol 2011   
A Mutation of OSOTP 51 Leads to Impairment of PSI Complex Assembly and Serious Photo-damage in Rice
Tang,L., Zou,X.H., Achoundong,G., Potgieter,C., Second,G., Zhang,D.Y. and Ge,S.
Mol. Phylogenet. Evol. 2010  54(1)  266-277
Phylogeny and biogeography of the rice tribe (Oryzeae): evidence from combined analysis of 20 chloroplast fragments
Masood,M.S., Nishikawa,T., Fukuoka,S., Njenga,P.K., Tsudzuki,T. and Kadowaki,K.
Gene 2004  340(1)  133-139
The complete nucleotide sequence of wild rice (Oryza nivara) chloroplast genome: first genome wide comparative sequence analysis of wild and cultivated rice
Shimada,H. and Sugiura,M.
Nucleic Acids Res. 1991  19(5)  983-995
Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes
Hiratsuka,J., Shimada,H., Whittier,R., Ishibashi,T., Sakamoto,M., Mori,M., Kondo,C., Honji,Y., Sun,C.R. and Meng,B.Y.
Mol. Gen. Genet. 1989  217(2-3)  185-194
The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of cereals
DB Reference
Gramene ID -
Ontologies
Gene Ontology chloroplast thylakoid membrane( GO:0009535 )
plastid( GO:0009536 )
photosynthesis( GO:0015979 )
Trait Ontology -
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Jan 19, 2023

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