Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol _
Gene Symbol Synonym trnV, trnV(UAC), trnV-UAC
CGSNL Gene Name _
Gene Name Synonym tRNA-Val, Val-tRNA(UAC)
Protein Name
Allele
Chromosome No. Pt
Explanation X15901 (Japonica Group chloroplast genome). FJ908303-FJ908655 (wild rice species). AB436227-AB436285 (wild rice species, ndhC-tRNA Val intergenic region). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).
Trait Class
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID -
RAP ID -
Links Organelle Genome
INSD Accession List
(Test version) 		-
Map
Locate(cM)
References
Lv J., Shang L., Chen Y., Han Y., Yang X., Xie S., Bai W., Hu M., Wu H., Lei K., Ya'nan Yang, Ge S., Hai Phuong Trinh, Zhang Y., Guo L., Wang Z.
Rice (N Y) 2020  13(1)  25
OsSLC1 Encodes a Pentatricopeptide Repeat Protein Essential for Early Chloroplast Development and Seedling Survival.
Zhang,T., Hu,S., Zhang,G., Pan,L., Zhang,X., Al-Mssallem,I.S. and Yu,J.
PLoS ONE 2012  7 (7)  E42041
The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins
Tang,L., Zou,X.H., Achoundong,G., Potgieter,C., Second,G., Zhang,D.Y. and Ge,S.
Mol. Phylogenet. Evol. 2010  54(1)  266-277
Phylogeny and biogeography of the rice tribe (Oryzeae): evidence from combined analysis of 20 chloroplast fragments
Kumagai,M., Wang,L. and Ueda,S.
Gene 2010  462(1-2)  44-51
Genetic diversity and evolutionary relationships in genus Oryza revealed by using highly variable regions of chloroplast DNA
Masood,M.S., Nishikawa,T., Fukuoka,S., Njenga,P.K., Tsudzuki,T. and Kadowaki,K.
Gene 2004  340(1)  133-139
The complete nucleotide sequence of wild rice (Oryza nivara) chloroplast genome: first genome wide comparative sequence analysis of wild and cultivated rice
Nakazono,M. and Hirai,A.
Mol. Gen. Genet. 1993  236(2-3)  341-346
Identification of the entire set of transferred chloroplast DNA sequences in the mitochondrial genome of rice
Shimada,H. and Sugiura,M.
Nucleic Acids Res. 1991  19(5)  983-995
Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes
Hiratsuka,J., Shimada,H., Whittier,R., Ishibashi,T., Sakamoto,M., Mori,M., Kondo,C., Honji,Y., Sun,C.R. and Meng,B.Y.
Mol. Gen. Genet. 1989  217(2-3)  185-194
The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of cereals
Moon,E., Kao,T.H. and Wu,R.
Mol. Gen. Genet. 1988  213(2-3)  247-253
Rice mitochondrial genome contains a rearranged chloroplast gene cluster
DB Reference
Gramene ID -
Ontologies
Gene Ontology -
Trait Ontology -
Plant Ontology -
Related Strains
-
Phenotype images
-
Last updated
Jul 20, 2020

/rice/oryzabase