Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol SPDS1
Gene Symbol Synonym OsSPDS1, OsSPDS, SPDS
CGSNL Gene Name SPERMIDINE SYNTHASE 1
Gene Name Synonym spermidine synthase 1, Spermidine synthase
Protein Name SPERMIDINE SYNTHASE 1
Allele
Chromosome No. 7
Explanation AJ251298. Q9SMB1. D15401.
Trait Class Biochemical character
Seed - Physiological traits - Dormancy
Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AK099606
MSU ID LOC_Os07g22600.1
LOC_Os07g22600.2
RAP ID Os07g0408700
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Zhou R., Hu Q., Pu Q., Chen M., Zhu X., Gao C., Zhou G., Liu L., Wang Z., Yang J., Zhang J., Cao Y.
Sci Rep 2020  10(1)  8976
Spermidine Enhanced Free Polyamine Levels and Expression of Polyamine Biosynthesis Enzyme Gene in Rice Spikelets under Heat Tolerance before Heading.
Saha J., Giri K.
Gene 2017  609  88-103
Molecular phylogenomic study and the role of exogenous spermidine in the metabolic adjustment of endogenous polyamine in two rice cultivars under salt stress.
Liu S.J., Xu H.H., Wang W.Q., Li N., Wang W.P., Møller IM., Song S.Q.
Physiol Plant 2014   
A proteomic analysis of rice seed germination as affected by high temperature and ABA treatment.
Imai,R., Ali,A., Pramanik,H.R., Nakaminami,K., Sentoku,N. and Kato,H.
J. Plant Physiol. 2004  161(7)  883-886
A distinctive class of spermidine synthase is involved in chilling response in rice.
Sasaki,T., Song,J., Koga-Ban,Y., Matsui,E., Fang,F., Higo,H., Nagasaki,H., Hori,M., Miya,M. and Murayama-Kayano,E.
Plant J. 1994  6(4)  615-624
Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library.
DB Reference
Gramene ID -
Ontologies
Gene Ontology response to heat( GO:0009408 )
response to temperature stimulus( GO:0009266 )
seed germination( GO:0009845 )
polyamine biosynthetic process( GO:0006596 )
spermidine biosynthetic process( GO:0008295 )
response to salt stress( GO:0009651 )
spermidine synthase activity( GO:0004766 )
Trait Ontology temperature response trait( TO:0000432 )
salt tolerance( TO:0006001 )
heat tolerance( TO:0000259 )
Plant Ontology seed( PO:0009010 )
0 seed germination stage( PO:0007057 )
Related Strains
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Phenotype images
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Last updated
Sep 1, 2020

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