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Basic Information
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CGSNL Gene Symbol
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HMGB1
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Gene Symbol Synonym
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OsHMGB1, OsMNB1B, MNB1B
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CGSNL Gene Name
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HIGH MOBILITY GROUP PROTEIN B1
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Gene Name Synonym
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High mobility group protein B1, High mobility group subgroup B protein 1, high mobility group B1, DNA-binding protein MNB1B, high-mobility-group box 1 protein
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Protein Name
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HIGH MOBILITY GROUP PROTEIN B1
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Allele
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oshmgb1, hb1-1, hb1-5, Oshmgb1, hmgb1-1, hmgb1-2
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Chromosome No.
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6
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Explanation
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AF541859. AY262827. D16074. GO:1900425: negative regulation of defense response to bacterium.
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Trait Class
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Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
Character as QTL - Plant growth activity
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK062226
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MSU ID
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LOC_Os06g51220.2
LOC_Os06g51220.3
LOC_Os06g51220.4
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RAP ID
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Os06g0728000
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Wang X., Ju Y., Wu T., Kong L., Yuan M., Liu H., Chen X., Chu Z.
Plant Biotechnol. J. 2024 22(8) 2186-2200
The clade III subfamily of OsSWEETs directly suppresses rice immunity by interacting with OsHMGB1 and OsHsp20L.
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Wang Y., Wang F., Lu H., Lin R., Liu J., Liu Y., Xu J., Wu Y., Wang Z., Zhou M., Mo X., Wu Z., Shou H., Zheng S., Mao C.
New Phytol. 2023 240(2) 727-743
Rice chromatin protein OsHMGB1 is involved in phosphate homeostasis and plant growth by affecting chromatin accessibility.
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Xu K., Chen S., Li T., Yu S., Zhao H., Liu H., Luo L.
Front Plant Sci 2021 12 711271
Overexpression of OsHMGB707, a High Mobility Group Protein, Enhances Rice drought tolerance by Promoting Stress-Related Gene Expression.
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Sahid S., Roy C., Paul S., Datta R.
J. Exp. Bot. 2020
Rice Lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins.
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Chinpongpanich A., Phean-o-pas S., Thongchuang M., Qu L.J., Buaboocha T.
Acta Biochim. Biophys. Sin. (Shanghai) 2015 47(11) 880-9
C-terminal extension of calmodulin-like 3 protein from Oryza sativa L.: interaction with a high mobility group target protein.
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Wu,Q., Zhang,W., Pwee,K.H. and Kumar,P.P.
Arch. Biochem. Biophys. 2003 411(1) 105-111
Rice HMGB1 protein recognizes DNA structures and bends DNA efficiently.
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Wu,Q., Zhang,W., Pwee,K.-H. and Kumar,P.P.
Gene 2003 312 103-109
Cloning and characterization of rice HMGB1 gene
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Sasaki,T., Song,J., Koga-Ban,Y., Matsui,E., Fang,F., Higo,H., Nagasaki,H., Hori,M., Miya,M. and Murayama-Kayano,E.
Plant J. 1994 6(4) 615-624
Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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regulation of gene expression, epigenetic( GO:0040029 )
positive regulation of transcription, DNA-dependent( GO:0045893 )
chromatin remodeling( GO:0006338 )
phosphate ion homeostasis( GO:0055062 )
response to starvation( GO:0042594 )
cellular response to phosphate starvation( GO:0016036 )
chromatin( GO:0000785 )
defense response to bacterium( GO:0042742 )
response to water deprivation( GO:0009414 )
DNA binding( GO:0003677 )
nucleus( GO:0005634 )
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Trait Ontology
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drought tolerance( TO:0000276 )
bacterial blight disease resistance( TO:0000175 )
phosphorus sensitivity( TO:0000102 )
growth and development trait( TO:0000357 )
plant height( TO:0000207 )
grain yield( TO:0000396 )
relative plant height( TO:0001034 )
relative yield( TO:0000153 )
shoot dry weight( TO:0000552 )
relative shoot dry weight( TO:0000636 )
root dry weight( TO:0000078 )
relative root dry weight( TO:0000644 )
grain yield per plant( TO:0000449 )
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Plant Ontology
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root epidermis( PO:0006036 )
root cortex( PO:0000258 )
root stele( PO:0020124 )
root cap( PO:0020123 )
xylem( PO:0005352 )
phloem( PO:0005417 )
parenchyma( PO:0005421 )
mesophyll cell( PO:0004006 )
seedling( PO:0008037 )
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Related Strains
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Phenotype images
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Last updated
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Feb 25, 2025
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Update info.