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Basic Information
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CGSNL Gene Symbol
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GAPC1
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Gene Symbol Synonym
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OsGapC1, OsGapC3, GAPC3, OsGAPDHC2, GAPDHC2
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CGSNL Gene Name
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GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC 1
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Gene Name Synonym
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glyceraldehydephosphate dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, cytosolic GAPDH1, cytosolic glyceraldehyde-3-phosphate dehydrogenase 1
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Protein Name
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GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC 1
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Allele
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OsGAPC3-1, OsGAPC3-2, OsGAPC3-3, gapc1, gapc1-12, gapc1-21
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Chromosome No.
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2
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Explanation
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D10409. Q6K5G8. D15096. OsGapC3 in Wierbowski et al. 2020, Peng et al. 2024. GO:2000904: regulation of starch metabolic process. TO:0001069: cooking quality trait. GO:1901001: negative regulation of response to salt stress.
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Trait Class
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Biochemical character
Seed - Physiological traits - Storage substances
Tolerance and resistance - Stress tolerance
Character as QTL - Grain quality
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK062215
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MSU ID
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LOC_Os02g38920.1
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RAP ID
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Os02g0601300
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Kim J.Y., Lee Y.J., Lee H.J., Go J.Y., Lee H.M., Park J.S., Cho Y.G., Jung Y.J., Kang K.K.
Int J Mol Sci 2024 25(22)
Knockout of <i>OsGAPDHC7</i> Gene Encoding Cytosolic Glyceraldehyde-3-phosphate dehydrogenase Affects Energy Metabolism in Rice Seeds.
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Jiang L., Xiao W., Chen H., Qi Y., Kuang X., Shi J., Liu Z., Cao J., Lin Q., Yu F., Wang L.
New Phytol. 2024 244(3) 825-839
The OsGAPC1-OsSGL module negatively regulates salt tolerance by mediating abscisic acid biosynthesis in rice.
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Peng B., Liu Y., Sun X., Zhao Q., Qiu J., Tian X., Peng J., Zhang Z., Wang Y., Huang Y., Pang R., Zhou W., Qi Y., Sun Y., Wang Q., He Y.
Front Plant Sci 2024 15 1470316
The <i>OsGAPC3</i> mutation significantly affects grain quality traits and improves the nutritional quality of rice.
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Xu Z.
Adv Biol (Weinh) 2023 e2300106
A Specific Protective Mechanism Against Chloroplast Photo-Reactive Oxygen Species in Phosphate-Starved Rice Plants.
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Wierbowski S.D., Vo T.V., Falter-Braun P., Jobe T.O., Kruse L.H., Wei X., Liang J., Meyer M.J., Akturk N., Rivera-Erick CA., Cordero N.A., Paramo M.I., Shayhidin E.E., Bertolotti M., Tippens N.D., Akther K., Sharma R., Katayose Y., Salehi-Ashtiani K., Hao T., Ronald P.C., Ecker J.R., Schweitzer P.A., Kikuchi S., Mizuno H., Hill D.E., Vidal M., Moghe G.D., McCouch S.R., Yu H.
Proc. Natl. Acad. Sci. U.S.A. 2020 117(21) 11836-11842
A massively parallel barcoded sequencing pipeline enables generation of the first ORFeome and interactome map for rice.
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Nishizawa Y., Mochizuki S., Koiwai H., Kondo K., Kishimoto K., Katoh E., Minami E.
Plant Signal Behav 2015 10(3) e990801
Rice ubiquitin ligase EL5 prevents root meristematic cell death under high nitrogen conditions and interacts with a cytosolic GAPDH.
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Sasaki,T., Song,J., Koga-Ban,Y., Matsui,E., Fang,F., Higo,H., Nagasaki,H., Hori,M., Miya,M. and Murayama-Kayano,E.
Plant J. 1994 6(4) 615-624
Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library.
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Umeda,M., Hara,C., Matsubayashi,Y., Li,H.H., Liu,Q., Tadokoro,F., Aotsuka,S. and Uchimiya,H.
Plant Mol. Biol. 1994 25(3) 469-478
Expressed sequence tags from cultured cells of rice (Oryza sativa L.) under stressed conditions: analysis of transcripts of genes engaged in ATP-generating pathways.
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Uchimiya,H., Kidou,S., Shimazaki,T., Aotsuka,S., Takamatsu,S., Nishi,R., Hashimoto,H., Matsubayashi,Y., Kidou,N., Umeda,M. and Kato,A.
Plant J. 1992 2(6) 1005-1009
Random sequencing og cDNA librariesreveals a variety of expressed genes in cultured cells of rice (Oryza sativa L.)
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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nucleus( GO:0005634 )
negative regulation of abscisic acid biosynthetic process( GO:0090359 )
response to salt stress( GO:0009651 )
starch biosynthetic process( GO:0019252 )
cell redox homeostasis( GO:0045454 )
glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity( GO:0004365 )
cytoplasm( GO:0005737 )
glycolysis( GO:0006096 )
NADP or NADPH binding( GO:0050661 )
NAD or NADH binding( GO:0051287 )
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Trait Ontology
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endosperm storage protein content( TO:0002653 )
starch content( TO:0000696 )
seed quality( TO:0000162 )
fruit flavor trait( TO:0002694 )
gel consistency( TO:0000211 )
chalky endosperm( TO:0000266 )
protein composition related trait( TO:0000490 )
grain yield per plant( TO:0000449 )
starch grain synthesis( TO:0002658 )
salt tolerance( TO:0006001 )
relative chlorophyll content( TO:0001016 )
abscisic acid content( TO:0002667 )
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Plant Ontology
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root( PO:0009005 )
stem( PO:0009047 )
leaf( PO:0025034 )
leaf sheath( PO:0020104 )
glume( PO:0009039 )
endosperm( PO:0009089 )
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Related Strains
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Phenotype images
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Last updated
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Mar 10, 2026
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Update info.