Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | PPR676 |
| Gene Symbol Synonym | OsPPR676, OsATP4, ATP4 |
| CGSNL Gene Name | PENTATRICOPEPTIDE REPEAT PROTEIN 676 |
| Gene Name Synonym | pentatricopeptide repeat protein 676 |
| Protein Name | PENTATRICOPEPTIDE REPEAT PROTEIN 676 |
| Allele | osppr676, osppr676-1, osppr676-2, osppr676-3, osatp4 |
| Chromosome No. | 3 |
| Explanation | an Rf (fertility restorer)-like protein. OsPPR676 is the orthologue of maize ATP4 and Arabidopsis SVR7. the ortholog of maize ATP4. GO:1900871: chloroplast mRNA modification. TO:0006060: leaf chlorosis. |
| Trait Class |
Vegetative organ - Leaf
Vegetative organ - Culm Reproductive organ - panicle Reproductive organ - Pollination, fertilization, fertility - Male sterility Seed - Morphological traits Tolerance and resistance - Stress tolerance |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. | - |
| MSU ID |
LOC_Os03g11670.1
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| RAP ID |
Os03g0215900 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
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INSD Accession List (Test version) |
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| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Liu X.J., Sun J., Huang Y., Li C., Zheng P., Yuan Y., Chen H., Jan M., Zheng H., Du H., Tu J.
Front Plant Sci 2021 12 713544 Osj10gBTF3-Mediated Import of Chloroplast Protein Is Essential for pollen Development in Rice.
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Zhang J., Guo Y., Fang Q., Zhu Y., Zhang Y., Liu X., Lin Y., Barkan A., Zhou F.
Plant Physiol. 2020 184(4) 2011-2021 The PPR-SMR protein ATP4 Is Required for Editing the Chloroplast <i>rps8</i> mRNA in Rice and Maize.
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Liu Y.J., Liu X., Chen H., Zheng P., Wang W., Wang L., Zhang J., Tu J.
Sci Rep 2017 7(1) 11484 A Plastid-Localized Pentatricopeptide Repeat Protein is Required for Both pollen Development and Plant Growth in Rice.
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Wang Y., Zhang X., Lu S., Wang M., Wang L., Wang W., Cao F., Chen H., Wang J., Zhang J., Tu J.
Plant Cell Physiol. 2012 53(12) 2073-89 Inhibition of a basal transcription factor 3-like gene Osj10gBTF3 in rice results in significant plant miniaturization and typical pollen abortion.
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
pollen development( GO:0009555 )
plastid organization( GO:0009657 ) response to cold( GO:0009409 ) mRNA modification( GO:0016556 ) starch biosynthetic process( GO:0019252 ) carbohydrate biosynthetic process( GO:0016051 ) fatty acid biosynthetic process( GO:0006633 ) cytidine to uridine editing( GO:0016554 ) growth( GO:0040007 ) anther development( GO:0048653 ) plastid( GO:0009536 ) chloroplast( GO:0009507 ) chromoplast( GO:0009509 ) leucoplast( GO:0009516 ) cytosol( GO:0005829 ) cytoplasm( GO:0005737 ) |
| Trait Ontology |
leaf length( TO:0000135 )
panicle length( TO:0000040 ) pollen sterility( TO:0000053 ) cold tolerance( TO:0000303 ) plastid development trait( TO:0002714 ) leaf color( TO:0000326 ) growth and development trait( TO:0000357 ) plant height( TO:0000207 ) grain weight( TO:0000590 ) yield trait( TO:0000371 ) leaf width( TO:0000370 ) chlorophyll content( TO:0000495 ) photosynthetic ability( TO:0000316 ) |
| Plant Ontology |
pollen development stage( PO:0001007 )
anther development stage( PO:0001004 ) tapetum( PO:0025313 ) |
| Related Strains | |
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| Phenotype images | |
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| Last updated | |
| Mar 10, 2022 | |
