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Basic Information
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CGSNL Gene Symbol
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PIL11
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Gene Symbol Synonym
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OsPIL11, OsbHLH102, bHLH102, PIF4, OsPIF4
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CGSNL Gene Name
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PHYTOCHROME INTERACTING FACTOR-LIKE 11
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Gene Name Synonym
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basic helix-loop-helix protein 102, Phytochrome interacting factor 4
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Protein Name
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PHYTOCHROME INTERACTING FACTOR-LIKE 11
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Allele
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Chromosome No.
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12
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Explanation
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a homolog of OsbHLH107. GO:1902326: positive regulation of chlorophyll biosynthetic process. PO:0030123: panicle inflorescence. PO:0030117: spike inflorescence. TO:0000845: collective phyllome structure morphology trait.
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Trait Class
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Seed - Morphological traits - Grain shape
Character as QTL - Yield and productivity
Coloration - Chlorophyll
Reproductive organ - Heading date
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK066763
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MSU ID
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LOC_Os12g41650.2
LOC_Os12g41650.3
LOC_Os12g41650.4
LOC_Os12g41650.5
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RAP ID
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Os12g0610200
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Meng Y., Cui J., Zeng W., Li X., Du C., Wang P., Li G., Ge Q., Guo T., Kang G.
Nat Commun 2025 17(1) 511
The bHLH transcription factor PIL1 orchestrates starch synthesis in key cereal crops.
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Peng Y., Li Y., Zhai M., Jiang C., Liu Z., Xu X., Zhou G., Zheng C., Xie X.
Rice (N Y) 2025 18(1) 107
The Phytochrome-interacting factor OsPIL11 Coordinates grain weight and grain number Via Directly Regulating the Expression of OsMIR530 and OsCKX2 in Rice.
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Chen W., Tang L., Li Q., Cai Y., Ahmad S., Wang Y., Tang S., Guo N., Wei X., Tang S., Shao G., Jiao G., Xie L., Hu S., Sheng Z., Hu P.
Rice (N Y) 2024 17(1) 8
YGL3 Encoding an IPP and DMAPP Synthase Interacts with OsPIL11 to Regulate Chloroplast Development in Rice.
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Qiao W., Wang Y., Xu R., Yang Z., Sun Y., Su L., Zhang L., Wang J., Huang J., Zheng X., Liu S., Tian Y., Chen L., Liu X., Lan J., Yang Q.
Theor. Appl. Genet. 2021 134(5) 1531-1543
A functional chromogen gene C from wild rice is involved in a different anthocyanin biosynthesis pathway in indica and japonica.
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Yang X., Ren Y., Cai Y., Niu M., Feng Z., Jing R., Mou C., Liu X., Xiao L., Zhang X., Wu F., Guo X., Jiang L., Wan J.
Rice (N Y) 2018 11(1) 41
Overexpression of OsbHLH107, a member of the basic helix-loop-helix transcription factor family, enhances grain size.in rice (Oryza sativa L.).
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Liu Z., Wang Z., Gu H., You J., Hu M., Zhang Y., Zhu Z., Wang Y., Liu S., Chen L., Liu X., Tian Y., Zhou S., Jiang L., Liu L., Wan J.
Front Plant Sci 2018 9 782
Identification and Phenotypic Characterization of <i>ZEBRA LEAF16</i> Encoding a beta-hydroxyacyl-ACP dehydratase in Rice.
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Wei K., Chen H.
BMC Plant Biol. 2018 18(1) 309
Comparative functional genomics analysis of bHLH gene family in rice, maize and wheat.
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Chen H.C., Hsieh-Feng V., Liao P.C., Cheng W.H., Liu L.Y., Yang Y.W., Lai M.H., Chang M.C.
Plant Mol. Biol. 2017 94(4-5) 531-548
The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
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LI L., PENG W.F., LIU Q.Q., ZHOU J.J., LIANG W.H., XIE X.Z.
Rice Science 2012 19 263-268
Expression Patterns of OsPIL11, a Phytochrome-Interacting Factor in Rice, and Preliminary Analysis of Its Roles in Light Signal Transduction
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Zhao X.L., Shi Z.Y., Peng L.T., Shen G.Z., Zhang J.L.
N Biotechnol 2011 28(6) 788-97
An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
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Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
Biosci. Biotechnol. Biochem. 2007 71 1183-91
Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
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Li X, Duan X, Jiang H, Sun Y, Tang Y, Yuan Z, Guo J, Liang W, Chen L, Yin J, Ma H, Wang J, Zhang D.
Plant Physiol. 2006 141(4) 1167-84
Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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regulation of starch biosynthetic process( GO:0010581 )
nucleus( GO:0005634 )
positive regulation of cell division( GO:0051781 )
inflorescence development( GO:0010229 )
regulation of cell growth( GO:0001558 )
response to abiotic stimulus( GO:0009628 )
DNA binding( GO:0003677 )
response to water deprivation( GO:0009414 )
chloroplast organization( GO:0009658 )
chlorophyll biosynthetic process( GO:0015995 )
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Trait Ontology
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flowering time( TO:0002616 )
abiotic stress trait( TO:0000168 )
grain size( TO:0000397 )
grain length( TO:0000734 )
grain yield( TO:0000396 )
drought tolerance( TO:0000276 )
chloroplast development trait( TO:0002715 )
grain weight( TO:0000590 )
grain number( TO:0002759 )
filled grain number( TO:0000447 )
primary branch number( TO:0000547 )
grain width( TO:0000975 )
grain thickness( TO:0000399 )
plant height( TO:0000207 )
spikelet number( TO:0000456 )
inflorescence development trait( TO:0000621 )
seed development trait( TO:0000653 )
1000-seed weight( TO:0000382 )
grain weight( TO:0000919 )
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Plant Ontology
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inflorescence development stage( PO:0001083 )
spikelet( PO:0009051 )
flag leaf( PO:0020103 )
stem node( PO:0020141 )
inflorescence( PO:0009049 )
leaf( PO:0025034 )
lemma( PO:0009037 )
palea( PO:0009038 )
shoot system( PO:0009006 )
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Related Strains
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Phenotype images
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Last updated
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Jul 29, 2026
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Update info.