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Basic Information
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CGSNL Gene Symbol
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WOX9C
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Gene Symbol Synonym
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OsWOX9C, DWL2, OsDWL2, DWL2/WOX9C, OsWOX9D, WOX9D
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CGSNL Gene Name
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WUSCHEL-LIKE HOMEOBOX 9C
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Gene Name Synonym
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WUSCHEL-related homeobox 9C, DWT-LIKE 2
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Protein Name
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WUSCHEL-LIKE HOMEOBOX 9C
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Allele
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dwl2, dwl2-1, dwl2-2, wox9d
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Chromosome No.
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5
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Explanation
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AM234753. A3B6V0. a homologue of DWT1. OsWOX9D in Yoshida et al. 2023. GO:1990110: callus formation. TO:0000975: grain width. GO:1902182: shoot apical meristem development.
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Trait Class
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Vegetative organ - Culm
Reproductive organ - panicle
Seed - Morphological traits - Embryo
Seed - Morphological traits - Grain shape
Character as QTL - Grain quality
Character as QTL - Yield and productivity
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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AM234753
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MSU ID
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LOC_Os05g48990.1
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RAP ID
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Os05g0564500
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Tang J., Huang X., Sun M., Liang W.
Plant Physiol. 2024
DWARF TILLER1 regulates apical-basal pattern formation and proper orientation of rice embryos.
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Guo F., Wang H., Lian G., Cai G., Liu W., Zhang H., Li D., Zhou C., Han N., Zhu M., Su Y., Seo P.J., Xu L., Bian H.
Commun Biol 2023 6(1) 457
Initiation of scutellum-derived callus is regulated by an embryo-like developmental pathway in rice.
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Yoshida H., Okada S., Wang F., Shiota S., Mori M., Kawamura M., Zhao X., Wang Y., Nishigaki N., Kobayashi A., Miura K., Yoshida S., Ikegami M., Ito A., Huang L.T., Caroline Hsing YI., Yamagata Y., Morinaka Y., Yamasaki M., Kotake T., Yamamoto E., Sun J., Hirano K., Matsuoka M.
Mol Plant 2023 16(9) 1460-1477
Integrated genome-wide differentiation and association analyses identify causal genes underlying breeding-selected grain quality traits in japonica rice.
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Ren M., Huang M., Qiu H., Chun Y., Li L., Kumar A., Fang J., Zhao J., He H., Li X.
Rice (N Y) 2021 14(1) 56
Genome-Wide Association Study of the Genetic Basis of Effective tiller number in Rice.
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Fang F., Ye S., Tang J., Malcolm J Bennett, Liang W.
New Phytol. 2020 225(3) 1234-1246
DWT1/DWL2 act together with OsPIP5K1 to regulate plant uniform growth in rice.
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Wang W., Li G., Zhao J., Chu H., Lin W., Zhang D., Wang Z., Liang W.
PLoS Genet. 2014 10(3) e1004154
DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice.
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Nardmann,J., Zimmermann,R., Durantini,D., Kranz,E. and Werr,W.
Mol. Biol. Evol. 2007 24(11) 2474-2484
WOX Gene Phylogeny in Poaceae: A Comparative Approach Addressing Leaf and Embryo Development
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Nardmann,J. and Werr,W.
Mol. Biol. Evol. 2006 23(12) 2492-2504
The shoot stem cell niche in angiosperms: expression patterns of WUS orthologues in rice and maize imply major modifications in the course of mono- and dicot evolution
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
transcription, DNA-dependent( GO:0006351 )
inflorescence development( GO:0010229 )
sequence-specific DNA binding( GO:0043565 )
multicellular organismal development( GO:0007275 )
seed development( GO:0048316 )
meristem initiation( GO:0010014 )
stem cell fate determination( GO:0048867 )
stem cell differentiation( GO:0048863 )
longitudinal axis specification( GO:0009942 )
embryonic development( GO:0009790 )
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Trait Ontology
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stem elongation( TO:0006036 )
inflorescence development trait( TO:0000621 )
plant height( TO:0000207 )
internode length( TO:0000145 )
tiller number( TO:0000346 )
grain yield( TO:0000396 )
callus induction( TO:0000428 )
seed quality( TO:0000162 )
grain width( TO:0000402 )
sugar content( TO:0000333 )
fruit flavor trait( TO:0002694 )
seed size( TO:0000391 )
seed development trait( TO:0000653 )
embryo development trait( TO:0000620 )
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Plant Ontology
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stem elongation stage( PO:0007089 )
inflorescence development stage( PO:0001083 )
seed development stage( PO:0001170 )
plant embryo stage( PO:0007631 )
plant embryo( PO:0009009 )
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Related Strains
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Phenotype images
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Last updated
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Mar 5, 2026
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Update info.