Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol _
Gene Symbol Synonym mat-r, mat-r-1
CGSNL Gene Name _
Gene Name Synonym maturase-related protein
Protein Name
Allele
Chromosome No. Mt
Explanation LOC_Osm1g00490. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99385 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19891 (Nipponbare complete mitochondrial genome). AB763978, AB763984. JN861111: AER12976, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03722 (indica IR6888 complete mitochondrial genome). mat-r-1 in JN861111 and JN861112.
Trait Class Biochemical character
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID LOC_Osm1g00490
RAP ID -
Links Organelle Genome
INSD Accession List
(Test version) 		-
Map
Locate(cM)
References
Chen X., Hu J., Zhang H., Ding Y.
Gene 2014  537(1)  143-8
DNA methylation changes in photoperiod-thermo-sensitive male sterile rice PA64S under two different conditions.
Toda T., Toriyama K.
Rice (N Y) 2013  6  2
Re-sequencing of mitochondrial genes in a standard rice cultivar Nipponbare.
Bentolila,S. and Stefanov,S.
Plant Physiol. 2012  158(2)  996-1017
A reevaluation of rice mitochondrial evolution based on the complete sequence of male-fertile and male-sterile mitochondrial genomes
Zhang,T., Hu,S., Zhang,G., Pan,L., Zhang,X., Al-Mssallem,I.S. and Yu,J.
PLoS ONE 2012  7 (7)  E42041
The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins
Tian,X., Zheng,J., Hu,S. and Yu,J.
Plant Physiol. 2006  140(2)  401-410
The Rice Mitochondrial Genomes and Their Variations
Notsu,Y., Masood,S., Nishikawa,T., Kubo,N., Akiduki,G., Nakazono,M., Hirai,A. and Kadowaki,K.
Molecular Genetics & Genomics (Molecular General Genetics up to 2001) 2002  268(4)  434-445
The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants
DB Reference
Gramene ID -
Ontologies
Gene Ontology RNA binding( GO:0003723 )
mRNA processing( GO:0006397 )
RNA-dependent DNA replication( GO:0006278 )
mitochondrion( GO:0005739 )
RNA-directed DNA polymerase activity( GO:0003964 )
Trait Ontology male sterility( TO:0000437 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Aug 23, 2014

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