Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol _
Gene Symbol Synonym atp6, N-atp6, B-ATP6, B-atp6, atp6-1
CGSNL Gene Name _
Gene Name Synonym ATP synthase F0 subunit 6, ATPase subunit 6, N-ATPASE SUBUNIT 6, B-ATPASE SUBUNIT 6, ATPase subunit 6
Protein Name
Chromosome No. Mt
Explanation LOC_Osm1g00370. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99389 (cultivar Nipponbare), DQ167807 (isolate PA64S). S59890, S59393. X52161, X52162. X52160 (urf-rmc, chimeric atp6). D14339. KC188737, KC188738. AP011077 (Indica Group mitochondrial DNA, complete genome). BA000029: BAC19880 (Nipponbare complete mitochondrial genome). JN861111: AER12990, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03734 (indica IR6888 complete mitochondrial genome). atp6-1 in JN861111 and JN861112.
Trait Class Biochemical character
Reproductive organ - Pollination, fertilization, fertility - Male sterility
cDNA Accession No. -
MSU ID LOC_Osm1g00370
Links Organelle Genome
INSD Accession List
(Test version)
Zhang Q., Xu Y., Huang J., Zhang K., Xiao H., Qin X., Zhu L., Zhu Y., Hu J.
Front Plant Sci 2020  11  749
The Rice Pentatricopeptide Repeat Protein PPR756 Is Involved in pollen Development by Affecting Multiple RNA Editing in Mitochondria.
Chen N., Wang P., Li C., Wang Q., Pan J., Xiao F., Wang Y., Zhang K., Li C., Yang B., Sun C., Deng X.
Plant Cell Physiol. 2018   
A single nucleotide mutation of IspE gene participating in the MEP pathway for isoprenoid biosynthesis causes green-revertible yellow leaf phenotype in rice.
Huang W., Yu C., Hu J., Wang L., Dan Z., Zhou W., He C., Zeng Y., Yao G., Qi J., Zhang Z., Zhu R., Chen X., Zhu Y.
Proc. Natl. Acad. Sci. U.S.A. 2015  112(48)  14984-9
Pentatricopeptide-repeat family protein Rf6 functions with hexokinase 6 to rescue rice cytoplasmic male sterility.
Luan J., Liu T., Luo W., Liu W., Peng M., Li W., Dai X., Liang M., Chen L.
Plant Cell Rep. 2013  32(4)  545-54
Mitochondrial DNA genetic polymorphism in thirteen rice cytoplasmic male sterile lines.
Bentolila,S. and Stefanov,S.
Plant Physiol. 2012  158(2)  996-1017
A reevaluation of rice mitochondrial evolution based on the complete sequence of male-fertile and male-sterile mitochondrial genomes
Zhang,T., Hu,S., Zhang,G., Pan,L., Zhang,X., Al-Mssallem,I.S. and Yu,J.
PLoS ONE 2012  7 (7)  E42041
The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins
Fujii S., Kazama T., Yamada M., Toriyama K.
BMC Genomics 2010  11  209
Discovery of global genomic re-organization based on comparison of two newly sequenced rice mitochondrial genomes with cytoplasmic male sterility-related genes
Das S., Sen S., Chakraborty A., Chakraborti P., Maiti M.K., Basu A., Basu D., Sen S.K.
BMC Plant Biol 2010  10  39-
An unedited 1.1 kb mitochondrial orfB gene transcript in the wild abortive cytoplasmic male sterility (WA-CMS) system of Oryza sativa L. subsp. indica.
Ngangkham U., Parida S.K., De S., Anand Raj Kumar K., Singh A.K., Singh N.K., Mohapatra T.
Molecular Breeding 2010  26(2)  275-292
Genic markers for wild abortive (WA) cytoplasm based male sterility and its fertility restoration in rice
Ohta,H., Ogino,A., Kasai,M., Sano,Y. and Kanazawa,A.
Plant Cell Rep. 2010  29(4)  359-369
Fertility restoration by Ifr1 in rice with BT-type cytoplasmic male sterility is associated with a reduced level, but not processing, of atp6-orf79 co-transcribed RNA
Wang,Z., Zou,Y., Li,X., Zhang,Q., Chen,L., Wu,H., Su,D., Chen,Y., Guo,J., Luo,D., Long,Y., Zhong,Y. and Liu,Y.G.
Plant Cell 2006  18(3)  676-687
Cytoplasmic Male Sterility of Rice with Boro II Cytoplasm Is Caused by a Cytotoxic Peptide and Is Restored by Two Related PPR Motif Genes via Distinct Modes of mRNA Silencing.
Tian,X., Zheng,J., Hu,S. and Yu,J.
Plant Physiol. 2006  140(2)  401-410
The Rice Mitochondrial Genomes and Their Variations
Komori,T. and Nitta,N.
Plant Breeding 2004  123(6)  549-553
A simple method to control the seed purity of japonica hybrid rice varieties using PCR-based markers
Notsu,Y., Masood,S., Nishikawa,T., Kubo,N., Akiduki,G., Nakazono,M., Hirai,A. and Kadowaki,K.
Molecular Genetics & Genomics (Molecular General Genetics up to 2001) 2002  268(4)  434-445
The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants
Akagi,H., Shimada,H. and Fujimura,T.
Curr. Genet. 1995  29(1)  58-65
High-frequency inter-parental recombination between mitochondrial genomes of rice cybrids
Akagi,H., Sakamoto,M., Shinjyo,C., Shimada,H. and Fujimura,T.
Curr. Genet. 1994  25(1)  52-58
A unique sequence located downstream from the rice mitochondrial atp6 may cause male sterility
Iwabuchi,M., Kyozuka,J. and Shimamoto,K.
EMBO J. 1993  12(4)  1437-1446
Processing followed by complete editing of an altered mitochondrial atp6 RNA restores fertility of cytoplasmic male sterile rice.
M Iwahashi, M Nakazono, A Kanno, K Sugino, T Ishibashi, A Hirai
Theor. Appl. Genet. 1992  84(3-4)  275-9
Genetic and physical maps and a clone bank of mitochondrial DNA from rice.
Kadowaki,K.I., Suzuki,T. and Kazama,S.
Mol. Gen. Genet. 1990  224  10-16.
A chimeric gene containing the 5' portion of atp6 is associated with cytoplsmic male-sterility of rice.
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DB Reference
Gramene ID -
Gene Ontology mitochondrial inner membrane( GO:0005743 )
ATP synthesis coupled proton transport( GO:0015986 )
hydrogen ion transmembrane transporter activity( GO:0015078 )
hydrolase activity( GO:0016787 )
proton-transporting ATP synthase complex, coupling factor F(o)( GO:0045263 )
Trait Ontology -
Plant Ontology -
Related Strains
Phenotype images
Last updated
Sep 15, 2020