Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol RPL16
Gene Symbol Synonym rpl16, pseudo-rpl16
CGSNL Gene Name RIBOSOMAL PROTEIN L16
Gene Name Synonym ribosomal protein L16
Protein Name RIBOSOMAL PROTEIN L16
Allele
Chromosome No. Mt
Explanation LOC_Osm1g00270. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99348 (cultivar Nipponbare), DQ167807 (isolate PA64S). D21251. P46801. BA000029 (Nipponbare complete mitochondrial genome). JN861111: AER13007, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome). pseudogene (pseudo-rpl16) in BA000029 and JF281153. The loactions of DQ167400: AAZ99348 (BA000029: pseudo-rpl16) and JN861111: AER13007 (JF281153: rpl16 (pseudo)) are in conflict.
Trait Class Other
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID LOC_Osm1g00270
RAP ID -
Links Organelle Genome
INSD Accession List
(Test version) 		-
Map
Locate(cM)
References
Bentolila,S. and Stefanov,S.
Plant Physiol. 2012  158(2)  996-1017
A reevaluation of rice mitochondrial evolution based on the complete sequence of male-fertile and male-sterile mitochondrial genomes
Zhang,T., Hu,S., Zhang,G., Pan,L., Zhang,X., Al-Mssallem,I.S. and Yu,J.
PLoS ONE 2012  7 (7)  E42041
The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins
Tian,X., Zheng,J., Hu,S. and Yu,J.
Plant Physiol. 2006  140(2)  401-410
The Rice Mitochondrial Genomes and Their Variations
Notsu,Y., Masood,S., Nishikawa,T., Kubo,N., Akiduki,G., Nakazono,M., Hirai,A. and Kadowaki,K.
Molecular Genetics & Genomics (Molecular General Genetics up to 2001) 2002  268(4)  434-445
The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants
Nakazono,M., Itadani,H., Wakasugi,T., Tsutsumi,N., Sugiura,M. and Hirai,A.
Curr. Genet. 1995  27(1)  184-189
The rps3-rpl16-nad3-rps12 gene cluster in rice mitochondrial DNA is transcribed from alternative promoters.
Nakazono,M., Tsutsumi,N. and Hirai,A.
Plant Sci. 1995  105  227-234
The CRTA motif is present in the promoters of mitochondrial genes of rice
DB Reference
Gramene ID -
Ontologies
Gene Ontology structural constituent of ribosome( GO:0003735 )
mitochondrion( GO:0005739 )
ribosome( GO:0005840 )
translation( GO:0006412 )
rRNA binding( GO:0019843 )
Trait Ontology -
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Aug 22, 2014

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