Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol NDHF
Gene Symbol Synonym ndhF
CGSNL Gene Name NADH DEHYDROGENASE SUBUNIT 5
Gene Name Synonym NADH dehydrogenase subunit 5, NADH dehydrogenase ND5, NADH dehydrogenase subunit F, NADH-plastoquinone oxidoreductase subunit 5, NADH-plastoquinone oxidoreductase subunit F
Protein Name NADH DEHYDROGENASE SUBUNIT 5
Allele
Chromosome No. Pt
Explanation P0C327, P0C328. LOC_Osp1g00880. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46154: Nip165 (cultivar Nipponbare), AY522331 (isolate PA64S). HE573524 (Oryza meridionalis), HE577878 (Oryza coarctata). X15901:CAA33950 (Japonica Group chloroplast genome). FJ908335-FJ908349 (wild rice species). GU592207:ADD62869 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). GO:0080183: response to photooxidative stress.
Trait Class Biochemical character
Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID LOC_Osp1g00880
RAP ID -
Links Organelle Genome
INSD Accession List
(Test version) 		-
Map
Locate(cM)
References
He Y., Li R., Li J., Zheng S., Jiang D., Li X., Liu Q., Zhou X., Lu J., Chen J., Zhou H., Zhuang C.
Plant Commun 2026  7(8)  101791
OsRNase ZS2 degrades the transcripts of NdhD and NdhF subunits of the NDH complex to modulate the balance between cyclic and linear photosynthetic electron transport.
Zhang,T., Hu,S., Zhang,G., Pan,L., Zhang,X., Al-Mssallem,I.S. and Yu,J.
PLoS ONE 2012  7 (7)  E42041
The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins
Aliscioni,S., Bell,H.L., Besnard,G., Christin,P.A., Columbus,J.T., Duvall,M.R., Edwards,E.J., Giussani,L., Hasenstab-Lehman,K., Hilu,K.W., Hodkinson,T.R., Ingram,A.L., Kellog,E.A., Mashayekhi,S., Morrone,O., Osborne,C.P., Salamin,N., Schaefer,H., Spriggs,E., Smith,S.A. and Zuloaga,F.
New Phytol. 2012  193(2)  304-312
New grass phylogeny resolves deep evolutionary relationships and discovers C4 origins
Nock,C.J., Waters,D.L., Edwards,M.A., Bowen,S.G., Rice,N., Cordeiro,G.M. and Henry,R.J.
Plant Biotechnol J. 2011  9(3)  328-333
Chloroplast genome sequences from total DNA for plant identification
Tang,L., Zou,X.H., Achoundong,G., Potgieter,C., Second,G., Zhang,D.Y. and Ge,S.
Mol. Phylogenet. Evol. 2010  54(1)  266-277
Phylogeny and biogeography of the rice tribe (Oryzeae): evidence from combined analysis of 20 chloroplast fragments
Tang,J., Xia,H., Cao,M., Zhang,X., Zeng,W., Hu,S., Tong,W., Wang,J., Wang,J., Yu,J., Yang,H. and Zhu,L.
Plant Physiol. 2004  135(1)  412-420
A Comparison of Rice Chloroplast Genomes.
Masood,M.S., Nishikawa,T., Fukuoka,S., Njenga,P.K., Tsudzuki,T. and Kadowaki,K.
Gene 2004  340(1)  133-139
The complete nucleotide sequence of wild rice (Oryza nivara) chloroplast genome: first genome wide comparative sequence analysis of wild and cultivated rice
Shimada,H. and Sugiura,M.
Nucleic Acids Res. 1991  19(5)  983-995
Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes
Hiratsuka,J., Shimada,H., Whittier,R., Ishibashi,T., Sakamoto,M., Mori,M., Kondo,C., Honji,Y., Sun,C.R. and Meng,B.Y.
Mol. Gen. Genet. 1989  217(2-3)  185-194
The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of cereals
DB Reference
Gramene ID -
Ontologies
Gene Ontology photoinhibition( GO:0010205 )
photoprotection( GO:0010117 )
chloroplast thylakoid membrane( GO:0009535 )
plastid( GO:0009536 )
integral to membrane( GO:0016021 )
quinone binding( GO:0048038 )
transport( GO:0006810 )
response to oxidative stress( GO:0006979 )
cell redox homeostasis( GO:0045454 )
regulation of photosynthesis, light reaction( GO:0042548 )
NADH dehydrogenase (ubiquinone) activity( GO:0008137 )
ATP synthesis coupled electron transport( GO:0042773 )
Trait Ontology oxidative stress( TO:0002657 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Oct 6, 2026

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