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Basic Information
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CGSNL Gene Symbol
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CLPP
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Gene Symbol Synonym
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ORF216, ClpP, clpP
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CGSNL Gene Name
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CHLOROPLAST PROTEASE
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Gene Name Synonym
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ATP-dependent Clp protease proteolytic subunit, plastidic caseinolytic protease, chloroplast Clp, clp protease proteolytic subunit
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Protein Name
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CHLOROPLAST PROTEASE
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Allele
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Chromosome No.
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Pt
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Explanation
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P0C313, P0C314. LOC_Osp1g00590. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46136: Nip089 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33972 (Japonica Group chloroplast genome). FJ908162-FJ908176 (wild rice species). GU592207:ADD62850 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).
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Trait Class
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Biochemical character
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Expression
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Sequence/Locus
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cDNA Accession No.
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-
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MSU ID
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LOC_Osp1g00590
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RAP ID
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-
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Links
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Organelle Genome
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INSD Accession List
(Test version)
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Map
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Locate(cM)
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References
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Zhang,T., Hu,S., Zhang,G., Pan,L., Zhang,X., Al-Mssallem,I.S. and Yu,J.
PLoS ONE 2012 7 (7) E42041
The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins
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Nock,C.J., Waters,D.L., Edwards,M.A., Bowen,S.G., Rice,N., Cordeiro,G.M. and Henry,R.J.
Plant Biotechnol J. 2011 9(3) 328-333
Chloroplast genome sequences from total DNA for plant identification
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Tang,L., Zou,X.H., Achoundong,G., Potgieter,C., Second,G., Zhang,D.Y. and Ge,S.
Mol. Phylogenet. Evol. 2010 54(1) 266-277
Phylogeny and biogeography of the rice tribe (Oryzeae): evidence from combined analysis of 20 chloroplast fragments
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Tang,J., Xia,H., Cao,M., Zhang,X., Zeng,W., Hu,S., Tong,W., Wang,J., Wang,J., Yu,J., Yang,H. and Zhu,L.
Plant Physiol. 2004 135(1) 412-420
A Comparison of Rice Chloroplast Genomes.
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Masood,M.S., Nishikawa,T., Fukuoka,S., Njenga,P.K., Tsudzuki,T. and Kadowaki,K.
Gene 2004 340(1) 133-139
The complete nucleotide sequence of wild rice (Oryza nivara) chloroplast genome: first genome wide comparative sequence analysis of wild and cultivated rice
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Nakazono,M. and Hirai,A.
Mol. Gen. Genet. 1993 236(2-3) 341-346
Identification of the entire set of transferred chloroplast DNA sequences in the mitochondrial genome of rice
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Shimada,H. and Sugiura,M.
Nucleic Acids Res. 1991 19(5) 983-995
Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes
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Hiratsuka,J., Shimada,H., Whittier,R., Ishibashi,T., Sakamoto,M., Mori,M., Kondo,C., Honji,Y., Sun,C.R. and Meng,B.Y.
Mol. Gen. Genet. 1989 217(2-3) 185-194
The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of cereals
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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serine-type endopeptidase activity( GO:0004252 )
ATP binding( GO:0005524 )
proteolysis( GO:0006508 )
chloroplast thylakoid membrane( GO:0009535 )
plastid( GO:0009536 )
chloroplastic endopeptidase Clp complex( GO:0009840 )
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Trait Ontology
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-
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Plant Ontology
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Related Strains
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Phenotype images
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Last updated
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Mar 11, 2015
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Update info.