Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol _
Gene Symbol Synonym atpA
CGSNL Gene Name _
Gene Name Synonym ATP synthase CF1 alpha chain, ATPase alpha subunit, ATP synthase CF1 alpha subunit
Protein Name
Allele
Chromosome No. Pt
Explanation P0C2Z5, P0C2Z6. LOC_Osp1g00310. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46118: Nip046 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33993 (Japonica Group chloroplast genome). GU592207:ADD62831 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).
Trait Class Biochemical character
Expression
Sequence/Locus
cDNA Accession No. -
RAP ID -
Links Organelle Genome
INSD Accession List
(Test version)
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Map
Locate(cM)
References
Xiao H., Xu Y., Ni C., Zhang Q., Zhong F., Huang J., Liu W., Peng L., Zhu Y., Hu J.
J. Exp. Bot. 2018  69(12)  2923-2936
A rice dual-localized pentatricopeptide repeat protein is involved in organellar RNA editing together with OsMORFs.
Zhang,T., Hu,S., Zhang,G., Pan,L., Zhang,X., Al-Mssallem,I.S. and Yu,J.
PLoS ONE 2012  7 (7)  E42041
The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins
Nock,C.J., Waters,D.L., Edwards,M.A., Bowen,S.G., Rice,N., Cordeiro,G.M. and Henry,R.J.
Plant Biotechnol J. 2011  9(3)  328-333
Chloroplast genome sequences from total DNA for plant identification
Tang,J., Xia,H., Cao,M., Zhang,X., Zeng,W., Hu,S., Tong,W., Wang,J., Wang,J., Yu,J., Yang,H. and Zhu,L.
Plant Physiol. 2004  135(1)  412-420
A Comparison of Rice Chloroplast Genomes.
Masood,M.S., Nishikawa,T., Fukuoka,S., Njenga,P.K., Tsudzuki,T. and Kadowaki,K.
Gene 2004  340(1)  133-139
The complete nucleotide sequence of wild rice (Oryza nivara) chloroplast genome: first genome wide comparative sequence analysis of wild and cultivated rice
Nakazono,M. and Hirai,A.
Mol. Gen. Genet. 1993  236(2-3)  341-346
Identification of the entire set of transferred chloroplast DNA sequences in the mitochondrial genome of rice
Shimada,H. and Sugiura,M.
Nucleic Acids Res. 1991  19(5)  983-995
Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes
Hiratsuka,J., Shimada,H., Whittier,R., Ishibashi,T., Sakamoto,M., Mori,M., Kondo,C., Honji,Y., Sun,C.R. and Meng,B.Y.
Mol. Gen. Genet. 1989  217(2-3)  185-194
The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of cereals
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DB Reference
Gramene ID -
Ontologies
Gene Ontology ATP synthesis coupled proton transport( GO:0015986 )
ATP binding( GO:0005524 )
zinc ion binding( GO:0008270 )
response to cold( GO:0009409 )
chloroplast thylakoid membrane( GO:0009535 )
stromule( GO:0010319 )
plastoglobule( GO:0010287 )
plastid( GO:0009536 )
plasma membrane ATP synthesis coupled proton transport( GO:0042777 )
defense response to bacterium( GO:0042742 )
thylakoid lumen( GO:0031977 )
ATP hydrolysis coupled proton transport( GO:0015991 )
proton-transporting ATPase activity, rotational mechanism( GO:0046961 )
hydrogen ion transporting ATP synthase activity, rotational mechanism( GO:0046933 )
proton-transporting ATP synthase complex, catalytic core F(1)( GO:0045261 )
Trait Ontology -
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Jan 31, 2019


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