Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol _
Gene Symbol Synonym atpA
CGSNL Gene Name _
Gene Name Synonym ATP synthase CF1 alpha chain, ATPase alpha subunit, ATP synthase CF1 alpha subunit
Protein Name
Chromosome No. Pt
Explanation P0C2Z5, P0C2Z6. LOC_Osp1g00310. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46118: Nip046 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33993 (Japonica Group chloroplast genome). GU592207:ADD62831 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).
Trait Class Biochemical character
cDNA Accession No. -
MSU ID LOC_Osp1g00310
Links Organelle Genome
INSD Accession List
(Test version)
Xu X., Chen Z., Shi Y.F., Wang H.M., He Y., Shi L., Chen T., Wu J.L., Zhang X.B.
BMC Plant Biol. 2018  18(1)  264
Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice.
Xiao H., Xu Y., Ni C., Zhang Q., Zhong F., Huang J., Liu W., Peng L., Zhu Y., Hu J.
J. Exp. Bot. 2018  69(12)  2923-2936
A rice dual-localized pentatricopeptide repeat protein is involved in organellar RNA editing together with OsMORFs.
Zhang,T., Hu,S., Zhang,G., Pan,L., Zhang,X., Al-Mssallem,I.S. and Yu,J.
PLoS ONE 2012  7 (7)  E42041
The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins
Nock,C.J., Waters,D.L., Edwards,M.A., Bowen,S.G., Rice,N., Cordeiro,G.M. and Henry,R.J.
Plant Biotechnol J. 2011  9(3)  328-333
Chloroplast genome sequences from total DNA for plant identification
Tang,J., Xia,H., Cao,M., Zhang,X., Zeng,W., Hu,S., Tong,W., Wang,J., Wang,J., Yu,J., Yang,H. and Zhu,L.
Plant Physiol. 2004  135(1)  412-420
A Comparison of Rice Chloroplast Genomes.
Masood,M.S., Nishikawa,T., Fukuoka,S., Njenga,P.K., Tsudzuki,T. and Kadowaki,K.
Gene 2004  340(1)  133-139
The complete nucleotide sequence of wild rice (Oryza nivara) chloroplast genome: first genome wide comparative sequence analysis of wild and cultivated rice
Nakazono,M. and Hirai,A.
Mol. Gen. Genet. 1993  236(2-3)  341-346
Identification of the entire set of transferred chloroplast DNA sequences in the mitochondrial genome of rice
Shimada,H. and Sugiura,M.
Nucleic Acids Res. 1991  19(5)  983-995
Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes
Hiratsuka,J., Shimada,H., Whittier,R., Ishibashi,T., Sakamoto,M., Mori,M., Kondo,C., Honji,Y., Sun,C.R. and Meng,B.Y.
Mol. Gen. Genet. 1989  217(2-3)  185-194
The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of cereals
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DB Reference
Gramene ID -
Gene Ontology ATP synthesis coupled proton transport( GO:0015986 )
ATP binding( GO:0005524 )
zinc ion binding( GO:0008270 )
response to cold( GO:0009409 )
chloroplast thylakoid membrane( GO:0009535 )
stromule( GO:0010319 )
plastoglobule( GO:0010287 )
plastid( GO:0009536 )
plasma membrane ATP synthesis coupled proton transport( GO:0042777 )
defense response to bacterium( GO:0042742 )
thylakoid lumen( GO:0031977 )
ATP hydrolysis coupled proton transport( GO:0015991 )
proton-transporting ATPase activity, rotational mechanism( GO:0046961 )
hydrogen ion transporting ATP synthase activity, rotational mechanism( GO:0046933 )
proton-transporting ATP synthase complex, catalytic core F(1)( GO:0045261 )
Trait Ontology -
Plant Ontology -
Related Strains
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Last updated
Aug 24, 2019

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