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Detail of Gene

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Basic Information
CGSNL Gene Symbol RPOB
Gene Symbol Synonym rpoB, RpoB, Rpobeta
CGSNL Gene Name RNA POLYMERASE SUBUNIT B
Gene Name Synonym RNA polymerase beta chain, RNA polymerase beta subunit, Beta subunit of rice chloroplast RNA polymerase
Protein Name RNA POLYMERASE SUBUNIT B
Allele
Chromosome No. Pt
Explanation P0C502, P0C503. LOC_Osp1g00240. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46111: Nip036 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33986 (Japonica Group chloroplast genome). FJ908467-FJ908481 (wild rice species, trnC-rpoB intergenic spacer). GU592207:ADD62824 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).
Trait Class Biochemical character
Expression
Sequence/Locus
cDNA Accession No. -
RAP ID -
Links Organelle Genome
INSD Accession List
(Test version)
-
Map
Locate(cM)
References
Liu Z., Wang Z., Gu H., You J., Hu M., Zhang Y., Zhu Z., Wang Y., Liu S., Chen L., Liu X., Tian Y., Zhou S., Jiang L., Liu L., Wan J.
Front Plant Sci 2018  9  782
Identification and Phenotypic Characterization of <i>ZEBRA LEAF16</i> Encoding a beta-hydroxyacyl-ACP dehydratase in Rice.
Qiu Z., Chen D., He L., Zhang S., Yang Z., Zhang Y., Wang Z., Ren D., Qian Q., Guo L., Zhu L.
Rice (N Y) 2018  11(1)  39
The rice white green leaf 2 gene causes defects in chloroplast development and affects the plastid ribosomal protein S9.
Lin D., Zheng K., Liu Z., Li Z., Teng S., Xu J., Dong Y.
Plant Genome 2018  11(1) 
Rice <i>TCM1</i> Encoding a Component of the TAC Complex is Required for Chloroplast Development under Cold Stress.
Xiao H., Xu Y., Ni C., Zhang Q., Zhong F., Huang J., Liu W., Peng L., Zhu Y., Hu J.
J. Exp. Bot. 2018  69(12)  2923-2936
A rice dual-localized pentatricopeptide repeat protein is involved in organellar RNA editing together with OsMORFs.
Sun J., Zheng T., Yu J., Wu T., Wang X., Chen G., Tian Y., Zhang H., Wang Y., Terzaghi W., Wang C., Wan J.
New Phytol. 2017   
TSV, a putative plastidic oxidoreductase, protects rice chloroplasts from cold stress during development by interacting with plastidic thioredoxin Z.
Zhou K., Ren Y., Zhou F., Wang Y., Zhang L., Lyu J., Wang Y., Zhao S., Ma W., Zhang H., Wang L., Wang C., Wu F., Zhang X., Guo X., Cheng Z., Wang J., Lei C., Jiang L., Li Z., Wan J.
Planta 2017  245(1)  45-60
Young Seedling stripe1 encodes a chloroplast nucleoid-associated protein required for chloroplast development in rice seedlings.
Zhang Z., Cui X., Wang Y., Wu J., Gu X., Lu T.
Mol Plant 2017  10(1)  86-98
The RNA Editing Factor wsp1 Is Essential for Chloroplast Development in Rice.
Zhang Z., Tan J., Shi Z., Xie Q., Xing Y., Liu C., Chen Q., Zhu H., Wang J., Zhang J., Zhang G.
Plant Physiol. 2016   
albino leaf 1 that Encodes the sole Octotricopeptide Repeat Protein Is Responsible for Chloroplast Development in Rice.
Zheng K., Zhao J., Lin D., Chen J., Xu J., Zhou H., Teng S., Dong Y.
Rice (N Y) 2016  9(1)  13
The Rice TCM5 Gene Encoding a Novel Deg protease protein is Essential for Chloroplast Development under High Temperatures.
Zhang,T., Hu,S., Zhang,G., Pan,L., Zhang,X., Al-Mssallem,I.S. and Yu,J.
PLoS ONE 2012  7 (7)  E42041
The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins
Nock,C.J., Waters,D.L., Edwards,M.A., Bowen,S.G., Rice,N., Cordeiro,G.M. and Henry,R.J.
Plant Biotechnol J. 2011  9(3)  328-333
Chloroplast genome sequences from total DNA for plant identification
Tang,L., Zou,X.H., Achoundong,G., Potgieter,C., Second,G., Zhang,D.Y. and Ge,S.
Mol. Phylogenet. Evol. 2010  54(1)  266-277
Phylogeny and biogeography of the rice tribe (Oryzeae): evidence from combined analysis of 20 chloroplast fragments
Tang,J., Xia,H., Cao,M., Zhang,X., Zeng,W., Hu,S., Tong,W., Wang,J., Wang,J., Yu,J., Yang,H. and Zhu,L.
Plant Physiol. 2004  135(1)  412-420
A Comparison of Rice Chloroplast Genomes.
Masood,M.S., Nishikawa,T., Fukuoka,S., Njenga,P.K., Tsudzuki,T. and Kadowaki,K.
Gene 2004  340(1)  133-139
The complete nucleotide sequence of wild rice (Oryza nivara) chloroplast genome: first genome wide comparative sequence analysis of wild and cultivated rice
Zeltz,P., Kadowaki,K., Kubo,N., Maier,R.M., Hirai,A. and Kossel,H.
Plant Mol. Biol. 1996  31(3)  647-656
A promiscuous chloroplast DNA fragment is transcribed in plant mitochondria but the encoded RNA is not edited
H Inada, K Kusumi, M Nishimura, K Iba
Plant Cell Physiol. 1996  37(2)  229-32
Specific expression of the chloroplast gene for RNA polymerase (rpoB) at an early stage of leaf development in rice.
Nakazono,M. and Hirai,A.
Mol. Gen. Genet. 1993  236(2-3)  341-346
Identification of the entire set of transferred chloroplast DNA sequences in the mitochondrial genome of rice
Shimada,H. and Sugiura,M.
Nucleic Acids Res. 1991  19(5)  983-995
Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes
Hiratsuka,J., Shimada,H., Whittier,R., Ishibashi,T., Sakamoto,M., Mori,M., Kondo,C., Honji,Y., Sun,C.R. and Meng,B.Y.
Mol. Gen. Genet. 1989  217(2-3)  185-194
The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of cereals
TextPresso Search Search textpresso for RPOB ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology DNA binding( GO:0003677 )
plastid( GO:0009536 )
DNA-directed RNA polymerase activity( GO:0003899 )
ribonucleoside binding( GO:0032549 )
transcription, DNA-dependent( GO:0006351 )
nucleoid( GO:0009295 )
chloroplast( GO:0009507 )
chloroplast organization( GO:0009658 )
Trait Ontology chloroplast development trait( TO:0002715 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
May 14, 2019


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