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Basic Information
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CGSNL Gene Symbol
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PSBD
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Gene Symbol Synonym
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psbD, D2, OsPsbD1, OsPsbD2
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CGSNL Gene Name
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PHOTOSYSTEM II SUBUNIT D2
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Gene Name Synonym
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photosystem II protein D2, PSII D2 protein, reaction center protein D2
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Protein Name
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PHOTOSYSTEM II SUBUNIT D2
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Allele
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Chromosome No.
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Pt
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Explanation
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P0C436, P0C437. LOC_Osp1g00170. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46108: Nip018 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA34013 (Japonica Group chloroplast genome). S46932. GU592207:ADD62821 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). OsPsbD1 in Teng et al. 2014.
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Trait Class
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Biochemical character
Reproductive organ - Pollination, fertilization, fertility - Male sterility
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Expression
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Sequence/Locus
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cDNA Accession No.
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-
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MSU ID
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LOC_Osp1g00170
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RAP ID
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-
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Links
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Organelle Genome
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INSD Accession List
(Test version)
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Map
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Locate(cM)
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References
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Zang Y., Yao Y., Xu Z., Wang B., Mao Y., Wang W., Zhang W., Zhang H., Liu L., Wang Z., Liang G., Yang J., Zhou Y., Gu J.
Int J Mol Sci 2022 23(22)
The Relationships among "STAY-GREEN" Trait, Post-Anthesis Assimilate Remobilization, and Grain Yield in Rice (<i>Oryza sativa</i> L.).
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Zeng F., Zhu L., Wang G., Liang Y., Ma D., Wang J.
Front Plant Sci 2022 13 915050
Higher CO2 Assimilation in Selected Rice Recombinant Inbred Lines Is Driven by Higher CO2 Diffusion and Light Use Efficiency Related to Leaf Anatomy and mesophyll cell Density.
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Teng K., Li J., Liu L., Han Y., Du Y., Zhang J., Sun H., Zhao Q.
Acta Physiologiae Plantarum 2014 36 2219-2227
Exogenous ABA induces drought tolerance in upland rice: The role of chloroplast and ABA biosynthesis-related gene expression on photosystem II during PEG stress
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Chen X., Hu J., Zhang H., Ding Y.
Gene 2014 537(1) 143-8
DNA methylation changes in photoperiod-thermo-sensitive male sterile rice PA64S under two different conditions.
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Zhang,T., Hu,S., Zhang,G., Pan,L., Zhang,X., Al-Mssallem,I.S. and Yu,J.
PLoS ONE 2012 7 (7) E42041
The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins
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Nock,C.J., Waters,D.L., Edwards,M.A., Bowen,S.G., Rice,N., Cordeiro,G.M. and Henry,R.J.
Plant Biotechnol J. 2011 9(3) 328-333
Chloroplast genome sequences from total DNA for plant identification
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Tang,J., Xia,H., Cao,M., Zhang,X., Zeng,W., Hu,S., Tong,W., Wang,J., Wang,J., Yu,J., Yang,H. and Zhu,L.
Plant Physiol. 2004 135(1) 412-420
A Comparison of Rice Chloroplast Genomes.
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Masood,M.S., Nishikawa,T., Fukuoka,S., Njenga,P.K., Tsudzuki,T. and Kadowaki,K.
Gene 2004 340(1) 133-139
The complete nucleotide sequence of wild rice (Oryza nivara) chloroplast genome: first genome wide comparative sequence analysis of wild and cultivated rice
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Christopher,D.A., Kim,M. and Mullet,J.E.
Plant Cell 1992 4(7) 785-798
A novel light-regulated promoter is conserved in cereal and dicot chloroplasts
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Shimada,H. and Sugiura,M.
Nucleic Acids Res. 1991 19(5) 983-995
Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes
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Hiratsuka,J., Shimada,H., Whittier,R., Ishibashi,T., Sakamoto,M., Mori,M., Kondo,C., Honji,Y., Sun,C.R. and Meng,B.Y.
Mol. Gen. Genet. 1989 217(2-3) 185-194
The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of cereals
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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plastoglobule( GO:0010287 )
iron ion binding( GO:0005506 )
photosystem II( GO:0009523 )
chloroplast thylakoid membrane( GO:0009535 )
plastid( GO:0009536 )
photosynthetic electron transport in photosystem II( GO:0009772 )
integral to membrane( GO:0016021 )
oxidoreductase activity( GO:0016491 )
electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity( GO:0045156 )
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Trait Ontology
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male sterility( TO:0000437 )
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Plant Ontology
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Related Strains
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Phenotype images
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Last updated
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Jun 28, 2023
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Update info.