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Basic Information
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CGSNL Gene Symbol
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CSLF6
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Gene Symbol Synonym
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OsCslF6, OsCSLF6, OsCLD3, CLD3
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CGSNL Gene Name
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CELLULOSE SYNTHASE LIKE F6
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Gene Name Synonym
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Protein Name
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CELLULOSE SYNTHASE LIKE F6
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Allele
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cslf6, cslf6-1, cslf6-2
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Chromosome No.
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8
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Explanation
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AF435645. Q84UP7. OsCLD3 in Shi et al. 2016. TO:0020083: stem diameter. TO:0020068: beta-glucan content. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway. GO:1900425: negative regulation of defense response to bacterium. GO:1900150: regulation of defense response to fungus.
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Trait Class
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Vegetative organ - Culm
Tolerance and resistance - Disease resistance
Biochemical character
Tolerance and resistance - Insect resistance
Tolerance and resistance - Lesion mimic
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK065259
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MSU ID
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LOC_Os08g06380.1
LOC_Os08g06380.2
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RAP ID
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Os08g0160500
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
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Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Fang Y., Liao H., Wei Y., Yin J., Cha J., Liu X., Chen X., Chen L., Ma Z., Zhang J., Yong S., Zhou X., Xiong J., Cui X., Lyu X., Li W., Zhu H., Yang Y., Guo Y., Wang C., Ouyang Q., Wang L., Xiong Q., Tang Y., Zhu X., Lu X., Hou Q., Li W., Chern M., He M., Wang J., Song L., Chen X.
Nat Commun 2025 16(1) 6485
OsCDPK24 and OsCDPK28 phosphorylate heat shock factor OsHsfA4d to orchestrate abiotic and biotic stress responses in rice.
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Wen Y., Wu K., Chai B., Fang Y., Hu P., Tan Y., Wang Y., Wu H., Wang J., Zhu L., Zhang G., Gao Z., Ren D., Zeng D., Shen L., Dong G., Zhang Q., Li Q., Qian Q., Hu J.
BMC Plant Biol. 2023 23(1) 418
nlg1, encoding a mitochondrial membrane protein, controls leaf and grain development in rice.
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Dai Y.S., Liu D., Guo W., Liu Z.X., Zhang X., Shi L.L., Zhou D.M., Wang L.N., Kang K., Wang F.Z., Zhao S.S., Tan Y.F., Hu T., Chen W., Li P., Zhou Q.M., Yuan L.Y., Zhang Z., Chen Y.Q., Zhang W.Q., Li J., Yu L.J., Xiao S.
Plant Biotechnol. J. 2023 21(6) 1286-1300
Poaceae-specific β-1,3;1,4-d-glucans link jasmonate signalling to OsLecRK1-mediated defence response during rice-brown planthopper interactions.
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Chen Y., Qi H., Yang L., Xu L., Wang J., Guo J., Zhang L., Tan Y., Pan R., Shu Q., Qian Q., Song S.
Cell Rep 2023 42(7) 112702
The OsbHLH002/OsICE1-OSH1 module orchestrates secondary cell wall formation in rice.
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Zhang A., Jiang H., Chu H., Cao L., Chen J.
Curr Issues Mol Biol 2022 44(5) 2350-2361
Rice lesion mimic Gene Cloning and Association Analysis for disease resistance.
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Jiang H., Ren Y., Guo J., Yang H., Zhu X., Li W., Tao L., Zhan Y., Wang Q., Wu Y., Liu B., Ye Y.
Biotechnol Biofuels Bioprod 2022 15(1) 111
CEF3 is involved in membrane trafficking and essential for secondary cell wall biosynthesis and its mutation enhanced biomass enzymatic saccharification in rice.
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Chen H., Fang R., Deng R., Li J.
Plant Biotechnol. J. 2021
The OsmiRNA166b-OsHox32 pair regulates mechanical strength of rice plants by modulating cell wall biosynthesis.
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Zhu C.L., Xing B., Teng S.Z., Deng C., Shen Z.Y., Ai P.F., Lu T.G., Zhang S.W., Zhang Z.G.
Front Plant Sci 2021 12 760041
OsRELA Regulates Leaf Inclination by Repressing the Transcriptional Activity of OsLIC in Rice.
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Sun X., Ma Y., Yang C., Li J.
Plant Mol. Biol. 2020 104(3) 249-261
Rice OVATE family protein 6 regulates leaf angle by modulating secondary cell wall biosynthesis.
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Zhao K., Lin F., Romero-Gamboa SP., Saha P., Goh H.J., An G., Jung K.H., Hazen S.P., Bartley L.E.
Front Plant Sci 2019 10 1275
Rice Genome-Scale Network Integration Reveals Transcriptional Regulators of Grass Cell Wall Synthesis.
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Zhou S., Jiang W., Long F., Cheng S., Yang W., Zhao Y., Zhou D.X.
Plant Cell 2017 29(5) 1088-1104
Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of crown root Meristem.
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Shi L., Wei X.J., Adedze Y.M., Sheng Z.H., Tang S.Q., Hu P.S., Wang J.L.
Genet. Mol. Res. 2016 15(3)
Characterization and gene cloning of the rice (Oryza sativa L.) dwarf and narrow-leaf mutant DNL3.
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Vega-Sanchez ME, Verhertbruggen Y, Christensen U, Chen X, Sharma V, Varanasi P, Jobling SA, Talbot M, White RG, Joo M, Singh S, Auer M, Scheller HV, Ronald PC.
Plant Physiol. 2012 159 56-69
Loss of Cellulose Synthase-Like F6 Function Affects Mixed-Linkage Glucan Deposition, Cell Wall Mechanical Properties, and Defense Responses in Vegetative Tissues of Rice
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Wang L., Guo K., Li Y., Tu Y., Hu H., Wang B., Cui X., Peng L.
BMC Plant Biol. 2010 10 282
Expression profiling and integrative analysis of the CESA/CSL superfamily in rice.
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Hazen,S.P., Scott-Craig,J.S. and Walton,J.D.
Plant Physiol. 2002 128(2) 336-340
Cellulose synthase-like genes of rice.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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Golgi membrane( GO:0000139 )
integral to membrane( GO:0016021 )
cellulose synthase (UDP-forming) activity( GO:0016760 )
cellulose biosynthetic process( GO:0030244 )
cell wall polysaccharide biosynthetic process( GO:0070592 )
defense response( GO:0006952 )
defense response to insect( GO:0002213 )
response to jasmonic acid stimulus( GO:0009753 )
beta-glucan biosynthetic process( GO:0051274 )
plant-type cell wall organization( GO:0009664 )
cell wall cellulose biosynthetic process( GO:0052324 )
pattern recognition receptor signaling pathway( GO:0002221 )
respiratory burst during defense response( GO:0002679 )
negative regulation of respiratory burst( GO:0060268 )
defense response to fungus( GO:0050832 )
defense response to bacterium( GO:0042742 )
response to molecule of bacterial origin( GO:0002237 )
response to molecule of fungal origin( GO:0002238 )
response to heat( GO:0009408 )
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Trait Ontology
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mimic response( TO:0000063 )
plant height( TO:0000207 )
stem strength( TO:0000051 )
disease resistance( TO:0000112 )
brown planthopper resistance( TO:0000424 )
polysaccharide content( TO:0006007 )
jasmonic acid sensitivity( TO:0000172 )
white-backed planthopper resistance( TO:0000205 )
blast disease( TO:0000074 )
bacterial blight disease resistance( TO:0000175 )
sheath blight disease resistance( TO:0000255 )
heat tolerance( TO:0000259 )
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Plant Ontology
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leaf sheath( PO:0020104 )
stem( PO:0009047 )
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Related Strains
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Phenotype images
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Last updated
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Nov 19, 2025
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Update info.