Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol _
Gene Symbol Synonym matK, ORF542
CGSNL Gene Name _
Gene Name Synonym maturase K, maturase
Protein Name
Allele
Chromosome No. Pt
Explanation LOC_Osp1g00120. AF148650-AF148674 (O.stiva and other wild rice species). HE574131 (Oryza meridionalis), HE586098 (Oryza coarctata). FJ908261-FJ908266 (wild rice species). P0C382, P0C383. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46105 (cultivar Nipponbare), AY522331 (isolate PA64S). GU592207:ADD62818 (Japonica chloroplast comlete genome). EU434286, EU434287 (O. rufipogon and O. sativa). X15901: CAA34008 (Japonica Group chloroplast genome). ORF within trnK intron. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). HG794000. AF489915 (Oryza malampuzhaensis).
Trait Class
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID LOC_Osp1g00120
RAP ID -
Links Organelle Genome
INSD Accession List
(Test version) 		-
Map
Locate(cM)
References
Blaner,A., Schneider,J. and Roeser,M.
System. Biodivers. 12 (1), 111-124 REMARK DOI: 10.1080/14772000.2014.890137 2014   
Phylogenetic relationships in the grass family (Poaceae) based on the nuclear single copy locus topoisomerase 6 compared with chloroplast DNA
Aliscioni,S., Bell,H.L., Besnard,G., Christin,P.A., Columbus,J.T., Duvall,M.R., Edwards,E.J., Giussani,L., Hasenstab-Lehman,K., Hilu,K.W., Hodkinson,T.R., Ingram,A.L., Kellog,E.A., Mashayekhi,S., Morrone,O., Osborne,C.P., Salamin,N., Schaefer,H., Spriggs,E., Smith,S.A. and Zuloaga,F.
New Phytol. 2012  193(2)  304-312
New grass phylogeny resolves deep evolutionary relationships and discovers C4 origins
Zhang,T., Hu,S., Zhang,G., Pan,L., Zhang,X., Al-Mssallem,I.S. and Yu,J.
PLoS ONE 2012  7 (7)  E42041
The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins
Nock,C.J., Waters,D.L., Edwards,M.A., Bowen,S.G., Rice,N., Cordeiro,G.M. and Henry,R.J.
Plant Biotechnol J. 2011  9(3)  328-333
Chloroplast genome sequences from total DNA for plant identification
Kumagai,M., Wang,L. and Ueda,S.
Gene 2010  462(1-2)  44-51
Genetic diversity and evolutionary relationships in genus Oryza revealed by using highly variable regions of chloroplast DNA
Tang,L., Zou,X.H., Achoundong,G., Potgieter,C., Second,G., Zhang,D.Y. and Ge,S.
Mol. Phylogenet. Evol. 2010  54(1)  266-277
Phylogeny and biogeography of the rice tribe (Oryzeae): evidence from combined analysis of 20 chloroplast fragments
Sungkaew,S., Stapleton,C.M., Salamin,N. and Hodkinson,T.R.
J. Plant Res. 2009  122(1)  95-108
Non-monophyly of the woody bamboos (Bambuseae; Poaceae): a multi-gene region phylogenetic analysis of Bambusoideae s.s
Guo,Y.L. and Ge,S.
Am. J. Bot. 2005  92(9)  1548-1558
Molecular phylogeny of Oryzeae (Poaceae) based on DNA sequences from chloroplast, mitochondrial, and nuclear genomes
Bao,Y. and Ge,S.
Plant Syst. Evol. 2004  249(1-2)  55-66
Origin and phylogeny of Oryza species with the CD genome based on multiple-gene sequence data
Tang,J., Xia,H., Cao,M., Zhang,X., Zeng,W., Hu,S., Tong,W., Wang,J., Wang,J., Yu,J., Yang,H. and Zhu,L.
Plant Physiol. 2004  135(1)  412-420
A Comparison of Rice Chloroplast Genomes.
Masood,M.S., Nishikawa,T., Fukuoka,S., Njenga,P.K., Tsudzuki,T. and Kadowaki,K.
Gene 2004  340(1)  133-139
The complete nucleotide sequence of wild rice (Oryza nivara) chloroplast genome: first genome wide comparative sequence analysis of wild and cultivated rice
Ge,S., Li,A., Lu,B.-R., Zhang,S.-Z. and Hong,D.-Y.
Am. J. Bot. 2002  89(12)  1967-1972
A phylogeny of the rice tribe Oryzeae (Poaceae) based on matK sequence data
Ge,S., Sang,T., Lu,B.R. and Hong,D.Y.
Proc. Natl. Acad. Sci. U.S.A. 1999  96(25)  14400-14405
Phylogeny of rice genomes with emphasis on origins of allotetraploid species.
Shimada,H. and Sugiura,M.
Nucleic Acids Res. 1991  19(5)  983-995
Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes
Hiratsuka,J., Shimada,H., Whittier,R., Ishibashi,T., Sakamoto,M., Mori,M., Kondo,C., Honji,Y., Sun,C.R. and Meng,B.Y.
Mol. Gen. Genet. 1989  217(2-3)  185-194
The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of cereals
DB Reference
Gramene ID -
Ontologies
Gene Ontology RNA binding( GO:0003723 )
mRNA processing( GO:0006397 )
RNA modification( GO:0009451 )
tRNA processing( GO:0008033 )
RNA splicing( GO:0008380 )
chloroplast( GO:0009507 )
plastid( GO:0009536 )
Trait Ontology -
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Nov 24, 2015

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