Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol _
Gene Symbol Synonym rpl5, rpl5-1
CGSNL Gene Name _
Gene Name Synonym ribosomal protein L5, ribosomal protein L7
Protein Name
Allele
Chromosome No. Mt
Explanation LOC_Osm1g00570. AB017426. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99340 (cultivar Nipponbare), DQ167807 (isolate PA64S). AP011077 (Indica Group mitochondrial DNA, complete genome). BA000029: BAC19898 (Nipponbare complete mitochondrial genome). JN861111: AER13005, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03712 (indica IR6888 complete mitochondrial genome). rpl5-1 in JN861111 and JN861112.
Trait Class Reproductive organ - Pollination, fertilization, fertility - Male sterility
Other
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID LOC_Osm1g00570
RAP ID -
Links Organelle Genome
INSD Accession List
(Test version) 		-
Map
Locate(cM)
References
Bentolila,S. and Stefanov,S.
Plant Physiol. 2012  158(2)  996-1017
A reevaluation of rice mitochondrial evolution based on the complete sequence of male-fertile and male-sterile mitochondrial genomes
Zhang,T., Hu,S., Zhang,G., Pan,L., Zhang,X., Al-Mssallem,I.S. and Yu,J.
PLoS ONE 2012  7 (7)  E42041
The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins
Fujii S., Kazama T., Yamada M., Toriyama K.
BMC Genomics 2010  11  209
Discovery of global genomic re-organization based on comparison of two newly sequenced rice mitochondrial genomes with cytoplasmic male sterility-related genes
Tian,X., Zheng,J., Hu,S. and Yu,J.
Plant Physiol. 2006  140(2)  401-410
The Rice Mitochondrial Genomes and Their Variations
Notsu,Y., Masood,S., Nishikawa,T., Kubo,N., Akiduki,G., Nakazono,M., Hirai,A. and Kadowaki,K.
Molecular Genetics & Genomics (Molecular General Genetics up to 2001) 2002  268(4)  434-445
The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants
Kubo,N., Harada,K., Hirai,A. and Kadowaki,K.
Proc. Natl. Acad. Sci. U.S.A. 1999  96(16)  9207-9211
A single nuclear transcript encoding mitochondrial RPS14 and SDHB of rice is processed by alternative splicing: common use of the same mitochondrial targeting signal for different proteins.
DB Reference
Gramene ID -
Ontologies
Gene Ontology structural constituent of ribosome( GO:0003735 )
translation( GO:0006412 )
ribosome( GO:0005840 )
mitochondrion( GO:0005739 )
Trait Ontology -
Plant Ontology -
Related Strains
-
Phenotype images
-
Last updated
Aug 23, 2014

/rice/oryzabase