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Basic Information
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CGSNL Gene Symbol
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HAM1
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Gene Symbol Synonym
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OsSCL1, SCL1, OsHAM1, OsGRAS-9, OsGRAS-9, GRAS-9, GRAS9, OsGRAS8, GRAS8, SCL6-II, OsSCL6-II
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CGSNL Gene Name
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HAIRY MERISTEM 1
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Gene Name Synonym
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SCARECROW-LIKE 1, hairy meristem 1, GRAS protein 9, SCARECROW-LIKE6-II
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Protein Name
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GRAS PROTEIN 9
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Allele
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Chromosome No.
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2
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Explanation
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OsGRAS8 in Dutta et al. 2021. AF067401. GRAS (GAI-RGA-SCR) plant-specific transcription factor. Scarecrow transcription factor family protein.
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Trait Class
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Reproductive organ - Heading date
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK072900
AK066248
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MSU ID
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LOC_Os02g44360.1
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RAP ID
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Os02g0662700
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Um T., Choi J., Park T., Chung P.J., Jung S.E., Shim J.S., Kim Y.S., Choi I.Y., Park S.C., Oh S.J., Seo J.S., Kim J.K.
Plant Direct 2022 6(1) e374
Rice <i>microRNA171f/SCL6</i> module enhances drought tolerance by regulation of flavonoid biosynthesis genes.
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Dutta M., Saha A., Moin M., Kirti P.B.
Front Plant Sci 2021 12 777285
Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS transcription factor Genes in Rice.
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Zhong X., Yang J., Shi Y., Wang X., Wang G.L.
Mol. Plant Pathol. 2017
The DnaJ protein OsDjA6 negatively regulates rice innate immunity to the blast fungus Magnaporthe oryzae.
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Fan T., Li X., Yang W., Xia K., Ouyang J., Zhang M.
PLoS ONE 2015 10(5) e0125833
Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and shoot apical meristem Maintenance by Repressing Four OsHAM Transcription Factors.
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Tian C, Wan P, Sun S, Li J, Chen M.
Plant Mol. Biol. 2004 54 519-532
Genome-wide analysis of the GRAS gene family in rice and Arabidopsis.
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Pysh,L.D., Wysocka-Diller,J.W., Camilleri,C., Bouchez,D. and Benfey,P.N.
Plant J. 1999 18(1) 111-119
The GRAS gene family in Arabidopsis: sequence characterization and basic expression analysis of the SCARECROW-LIKE genes.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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response to water deprivation( GO:0009414 )
defense response to fungus( GO:0050832 )
response to abscisic acid stimulus( GO:0009737 )
transcription, DNA-dependent( GO:0006351 )
regulation of transcription, DNA-dependent( GO:0006355 )
regulation of timing of transition from vegetative to reproductive phase( GO:0048510 )
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Trait Ontology
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flowering time( TO:0002616 )
days to heading( TO:0000137 )
shoot apical meristem development( TO:0006020 )
vegetative to reproductive phase transition trait( TO:0006021 )
abscisic acid sensitivity( TO:0000615 )
sheath blight disease resistance( TO:0000255 )
drought tolerance( TO:0000276 )
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Plant Ontology
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shoot apical meristem( PO:0020148 )
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Related Strains
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Phenotype images
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Last updated
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Jun 10, 2022
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Update info.