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Basic Information
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CGSNL Gene Symbol
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_
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Gene Symbol Synonym
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coxI, COX1, cox1-1, cox1
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CGSNL Gene Name
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_
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Gene Name Synonym
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cytochrome oxidase subunit I, cytochrome c oxidase subunit 1
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Protein Name
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Allele
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Chromosome No.
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Mt
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Explanation
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LOC_Osm1g00550. M57903, X15990. P14578. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99388 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19897 (Nipponbare complete mitochondrial genome). JN861111: AER12979, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03713 (indica IR6888 complete mitochondrial genome). cox1-1 in JN861111 and JN861112.
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Trait Class
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Biochemical character
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Expression
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Sequence/Locus
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cDNA Accession No.
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-
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MSU ID
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LOC_Osm1g00550
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RAP ID
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-
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Links
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Organelle Genome
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INSD Accession List
(Test version)
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Map
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Locate(cM)
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References
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Chen N., Wang P., Li C., Wang Q., Pan J., Xiao F., Wang Y., Zhang K., Li C., Yang B., Sun C., Deng X.
Plant Cell Physiol. 2018
A single nucleotide mutation of IspE gene participating in the MEP pathway for isoprenoid biosynthesis causes green-revertible yellow leaf phenotype in rice.
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Bentolila,S. and Stefanov,S.
Plant Physiol. 2012 158(2) 996-1017
A reevaluation of rice mitochondrial evolution based on the complete sequence of male-fertile and male-sterile mitochondrial genomes
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Zhang,T., Hu,S., Zhang,G., Pan,L., Zhang,X., Al-Mssallem,I.S. and Yu,J.
PLoS ONE 2012 7 (7) E42041
The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins
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Ngangkham U., Parida S.K., De S., Anand Raj Kumar K., Singh A.K., Singh N.K., Mohapatra T.
Molecular Breeding 2010 26(2) 275-292
Genic markers for wild abortive (WA) cytoplasm based male sterility and its fertility restoration in rice
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Tian,X., Zheng,J., Hu,S. and Yu,J.
Plant Physiol. 2006 140(2) 401-410
The Rice Mitochondrial Genomes and Their Variations
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Notsu,Y., Masood,S., Nishikawa,T., Kubo,N., Akiduki,G., Nakazono,M., Hirai,A. and Kadowaki,K.
Molecular Genetics & Genomics (Molecular General Genetics up to 2001) 2002 268(4) 434-445
The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants
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Hamanaka,S., Ohtsu,K., Kadowaki,K., Nakazono,M. and Hirai,A.
Genes Genet. Syst. 1999 74(3) 71-75
Identification of cDNA encoding cytochrome c oxidase subunit 5c (COX5c) from rice: comparison of its expression with nuclear-encoded and mitochondrial-encoded COX genes.
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M Iwahashi, M Nakazono, A Kanno, K Sugino, T Ishibashi, A Hirai
Theor. Appl. Genet. 1992 84(3-4) 275-9
Genetic and physical maps and a clone bank of mitochondrial DNA from rice.
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Suzuki,T., Kazama,S., Hirai,A., Akihama,T. and Kadowaki,K.
Curr. Genet. 1991 20 (4) 331-337
The rice mitochondrial nad3 gene has an extended reading frame at its 5' end: nucleotide sequence analysis of rice trnS, nad3, and rps12 genes
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Kadowaki,K., Suzuki,T., Kazama,S., Oh-fuchi,T. and Sakamoto,W.
Nucleic Acids Res. 1989 17(18) 7519
Nucleotide sequence of the cytochrome oxidase subunit I gene from rice mitochondria
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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cytochrome-c oxidase activity( GO:0004129 )
iron ion binding( GO:0005506 )
heme binding( GO:0020037 )
electron transport chain( GO:0022900 )
respiratory chain( GO:0070469 )
aerobic respiration( GO:0009060 )
integral to membrane( GO:0016021 )
copper ion binding( GO:0005507 )
mitochondrion( GO:0005739 )
mitochondrial inner membrane( GO:0005743 )
plasma membrane( GO:0005886 )
oxidative phosphorylation( GO:0006119 )
electron carrier activity( GO:0009055 )
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Trait Ontology
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-
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Plant Ontology
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-
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Related Strains
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Phenotype images
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Last updated
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Sep 8, 2019
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Update info.