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Basic Information
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CGSNL Gene Symbol
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_
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Gene Symbol Synonym
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atpE
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CGSNL Gene Name
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_
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Gene Name Synonym
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ATP synthase epsilon subunit, ATPase epsilon subunit, ATP synthase CF1 epsilon subunit, ATP synthase CF1 epsilon chain
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Protein Name
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Allele
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Chromosome No.
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Pt
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Explanation
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D00432. P0C2Z2, P0C2Z3. M31464. X15901:CAA34002 (Japonica Group chloroplast genome). AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46126: Nip060 (cultivar Nipponbare), AY522331 (isolate PA64S). GU592207:ADD62839 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).
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Trait Class
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Biochemical character
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Expression
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Sequence/Locus
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cDNA Accession No.
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-
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MSU ID
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LOC_Osp1g00400
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RAP ID
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-
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Links
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Organelle Genome
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INSD Accession List
(Test version)
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Map
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Locate(cM)
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References
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Qiu Z., Wen S., Sun P., Chen D., Wang C., Song X., Xiao L., Zhang P., Zhao D., Wen C., Guan P., Du X., Sun Y., Xu C., Song J.
Plants (Basel) 2025 14(2)
RAS, a Pentatricopeptide Repeat Protein, Interacts with OsTRX z to Regulate Chloroplast Gene Transcription and RNA Processing.
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Zhang Q., Shen L., Wang Z., Hu G., Ren D., Hu J., Zhu L., Gao Z., Zhang G., Guo L., Zeng D., Qian Q.
Int J Mol Sci 2019 20(18)
OsCAF1, a CRM Domain Containing Protein, Influences Chloroplast Development.
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Zhang,T., Hu,S., Zhang,G., Pan,L., Zhang,X., Al-Mssallem,I.S. and Yu,J.
PLoS ONE 2012 7 (7) E42041
The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins
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Nock,C.J., Waters,D.L., Edwards,M.A., Bowen,S.G., Rice,N., Cordeiro,G.M. and Henry,R.J.
Plant Biotechnol J. 2011 9(3) 328-333
Chloroplast genome sequences from total DNA for plant identification
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Tang,J., Xia,H., Cao,M., Zhang,X., Zeng,W., Hu,S., Tong,W., Wang,J., Wang,J., Yu,J., Yang,H. and Zhu,L.
Plant Physiol. 2004 135(1) 412-420
A Comparison of Rice Chloroplast Genomes.
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Masood,M.S., Nishikawa,T., Fukuoka,S., Njenga,P.K., Tsudzuki,T. and Kadowaki,K.
Gene 2004 340(1) 133-139
The complete nucleotide sequence of wild rice (Oryza nivara) chloroplast genome: first genome wide comparative sequence analysis of wild and cultivated rice
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Nakazono,M. and Hirai,A.
Mol. Gen. Genet. 1993 236(2-3) 341-346
Identification of the entire set of transferred chloroplast DNA sequences in the mitochondrial genome of rice
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Shimada,H. and Sugiura,M.
Nucleic Acids Res. 1991 19(5) 983-995
Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes
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Nishizawa,Y. and Hirai,A.
Jpn. J. Genet. 1989 64(3) 223-229
The nucleotide sequences and expression of genes for the beta and epsilon subunits of ATP synthase from rice (Oryza sativa L.)
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Hiratsuka,J., Shimada,H., Whittier,R., Ishibashi,T., Sakamoto,M., Mori,M., Kondo,C., Honji,Y., Sun,C.R. and Meng,B.Y.
Mol. Gen. Genet. 1989 217(2-3) 185-194
The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of cereals
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Moon,E., Kao,T.H. and Wu,R.
Mol. Gen. Genet. 1988 213(2-3) 247-253
Rice mitochondrial genome contains a rearranged chloroplast gene cluster
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Moon,E., Kao,T.H. and Wu,R.
Nucleic Acids Res. 1987 15(10) 4358-4359
Sequence of the chloroplast-encoded atpB-atpE-trnM gene clusters from rice
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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ATP binding( GO:0005524 )
proton-transporting ATPase activity, rotational mechanism( GO:0046961 )
hydrogen ion transporting ATP synthase activity, rotational mechanism( GO:0046933 )
proton-transporting ATP synthase complex, catalytic core F(1)( GO:0045261 )
plasma membrane ATP synthesis coupled proton transport( GO:0042777 )
plastid( GO:0009536 )
chloroplast thylakoid membrane( GO:0009535 )
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Trait Ontology
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-
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Plant Ontology
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Related Strains
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Phenotype images
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Last updated
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Jun 16, 2025
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Update info.