Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | DET1 |
| Gene Symbol Synonym | OsDET1 |
| CGSNL Gene Name | DE-ETIOLATED1 |
| Gene Name Synonym | |
| Protein Name | |
| Allele | yel-sdj |
| Chromosome No. | 1 |
| Explanation | GQ898934, CT831157. miR168b-target. an ortholog of AtDET1. GO:1990756: ubiquitin ligase-substrate adaptor activity. TO:0020076: phenolic compound content. TO:0000975: grain width. |
| Trait Class |
Coloration - Chlorophyll
Coloration - Others Seed - Morphological traits - Embryo Seed - Morphological traits - Grain shape |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK100613
|
| MSU ID |
LOC_Os01g01484.1
LOC_Os01g01484.2 LOC_Os01g01484.4 LOC_Os01g01484.5 |
| RAP ID |
Os01g0104600 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
- |
| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
|
Panigrahy M., Panigrahi K.C.S., Poli Y., Ranga A., Majeed N.
Biology (Basel) 2022 11(5) Integrated Expression Analysis of Small RNA, Degradome and Microarray Reveals Complex Regulatory Action of miRNA during Prolonged Shade in Swarnaprabha Rice.
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Kim B., Lee Y., Nam J.Y., Lee G., Seo J., Lee D., Cho Y.H., Kwon S.W., Koh H.J.
Front Plant Sci 2022 13 952856 Mutations in <i>OsDET1</i>, <i>OsCOP10</i>, and <i>OsDDB1</i> confer embryonic lethality and alter flavonoid accumulation in Rice (<i>Oryza sativa</i> L.) seed.
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Huang J., Qin F., Zang G., Kang Z., Zou H., Hu F., Yue C., Li X., Wang G.
Plant Sci. 2013 210 241-9 Mutation of OsDET1 increases chlorophyll content in rice.
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
protein ubiquitination( GO:0016567 )
positive regulation of proteasomal ubiquitin-dependent protein catabolic process( GO:0032436 ) ubiquitin protein ligase binding( GO:0031625 ) cullin-RING ubiquitin ligase complex( GO:0031461 ) response to light stimulus( GO:0009416 ) circadian rhythm( GO:0007623 ) nucleus( GO:0005634 ) embryonic development ending in seed dormancy( GO:0009793 ) seed development( GO:0048316 ) regulation of flavonoid biosynthetic process( GO:0009962 ) |
| Trait Ontology |
chlorophyll content( TO:0000495 )
light sensitivity( TO:0000075 ) pericarp color( TO:0000707 ) embryo related trait( TO:0000064 ) seed development trait( TO:0000653 ) flavonoid content( TO:0000290 ) grain size( TO:0000397 ) grain weight( TO:0000590 ) grain length( TO:0000734 ) grain thickness( TO:0000399 ) 100-seed weight( TO:0000269 ) |
| Plant Ontology |
leaf( PO:0025034 )
seed development stage( PO:0001170 ) leaf sheath( PO:0020104 ) seed( PO:0009010 ) |
| Related Strains | |
| - | |
| Phenotype images | |
| - | |
| Last updated | |
| Dec 14, 2022 | |
