Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol _
Gene Symbol Synonym OsSET33, SET33, OsSDG723, SDG723, OsTrx1, Trx1, OsTrx1/SDG723, DLN219, OsDLN219
CGSNL Gene Name _
Gene Name Synonym SET protein 33, Trithorax1, TRITHORAX-like protein OsTrx1, SET domain group protein 723, DLN repressor 219, DLN motif protein 219
Protein Name
Allele ostrx1, ostrx1-2, ostrx1-3
Chromosome No. 9
Explanation GO:0035556:intracellular signal transduction. an ortholog of Arabidopsis Trithorax protein1 (ATX1). OsTrx1 functions as a negative regulator of Ghd7, independently from Ehd3 and Hd17/Ef7/OsELF3-1 (Choi et al. 2014).
Trait Class Biochemical character
Reproductive organ - Heading date
Reproductive organ - Panicle, Mode of branching
cDNA Accession No. AK065095
MSU ID LOC_Os09g04890.1
RAP ID Os09g0134500
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Abbai R., Singh V.K., Nachimuthu V.V., Sinha P., Selvaraj R., Vipparla A.K., Singh A.K., Singh U.M., Varshney R.K., Kumar A.
Plant Biotechnol. J. 2019   
Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains.
Singh P., Mathew I.E., Verma A., Tyagi A.K., Agarwal P.
Int J Mol Sci 2019  20(7) 
Analysis of Rice Proteins with DLN repressor Motif/S.
Jiang P., Wang S., Jiang H., Cheng B., Wu K., Ding Y.
Plant Physiol. 2018  176(4)  2761-2771
The COMPASS-Like Complex Promotes Flowering and Panicle Branching in Rice.
Jiang P., Wang S., Zheng H., Li H., Zhang F., Su Y., Xu Z., Lin H., Qian Q., Ding Y.
New Phytol. 2018  219(1)  422-435
SIP1 participates in regulation of flowering time in rice by recruiting OsTrx1 to Ehd1.
Choi S.C., Lee S., Kim S.R., Lee Y.S., Liu C., Cao X., An G.
Plant Physiol. 2014  164(3)  1326-37
Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3.
Lu Z., Huang X., Ouyang Y., Yao J.
PLoS ONE 2013  8(6)  e65426
Genome-wide identification, phylogenetic and co-expression analysis of OsSET gene family in rice.
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DB Reference
Gramene ID -
Gene Ontology nucleus( GO:0005634 )
cytoplasm( GO:0005737 )
plasma membrane( GO:0005886 )
long-day photoperiodism, flowering( GO:0048574 )
chromatin organization( GO:0006325 )
zinc ion binding( GO:0008270 )
regulation of flower development( GO:0009909 )
specification of floral organ identity( GO:0010093 )
phosphatidylinositol-5-phosphate binding( GO:0010314 )
histone methyltransferase activity (H3-K4 specific)( GO:0042800 )
inflorescence development( GO:0010229 )
Trait Ontology flowering time( TO:0002616 )
days to heading( TO:0000137 )
secondary branch number( TO:0000557 )
grain number( TO:0002759 )
inflorescence development trait( TO:0000621 )
Plant Ontology inflorescence development stage( PO:0001083 )
Related Strains
Phenotype images
Last updated
Jan 8, 2020