Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol SET6
Gene Symbol Synonym OsSET6, SDG720, OsPHD7, PHD7, OsSDG720, OsATXR5, ATXR5
CGSNL Gene Name SET PROTEIN 6
Gene Name Synonym SET protein 6, Plant homeo-domain finger protein 7, PHD finger protein 7, ARABIDOPSIS TRITHORAX- RELATED PROTEIN 5
Protein Name SET PROTEIN 6
Allele osatxr5c
Chromosome No. 1
Explanation BGIOSGA005241. B8A9M3 (indica). GO:0061458: reproductive system development.
Trait Class Tolerance and resistance - Stress tolerance
Character as QTL - Plant growth activity
Reproductive organ - Spikelet, flower, glume, awn
Expression
Sequence/Locus
cDNA Accession No. AK241918
MSU ID LOC_Os01g73460.1
RAP ID Os01g0965500
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Li X., Pan J., Liu Q., Zhang H., Li H., Jiang D.
Genome Biol. 2025  26(1)  303
Land plant-specific H3K27 methyltransferases ATXR5 and ATXR6 control plant development and stress responses.
Huang Y., Liu J., Cheng L., Xu D., Liu S., Hu H., Ling Y., Yang R., Zhang Y.
Plants (Basel) 2024  13(17) 
Genome-Wide Analysis of the Histone Modification Gene (<i>HM</i>) Family and Expression Investigation during Anther Development in Rice (<i>Oryza sativa</i> L.).
Waziri A., Singh D.K., Sharma T., Chatterjee S., Purty R.S.
Noncoding RNA Res 2020  5(4)  191-200
Genome-wide analysis of PHD finger gene family and identification of potential miRNA and their PHD finger gene specific targets in <i>Oryza sativa</i> indica.
Lu Z., Huang X., Ouyang Y., Yao J.
PLoS ONE 2013  8(6)  e65426
Genome-wide identification, phylogenetic and co-expression analysis of OsSET gene family in rice.
DB Reference
Gramene ID -
Ontologies
Gene Ontology chromatin( GO:0000785 )
positive regulation of transcription from RNA polymerase II promoter( GO:0045944 )
negative regulation of transcription, DNA-dependent( GO:0045892 )
transcription cofactor activity( GO:0003712 )
metal ion binding( GO:0046872 )
response to salt stress( GO:0009651 )
histone binding( GO:0042393 )
response to cold( GO:0009409 )
meiotic cell cycle( GO:0051321 )
pollen development( GO:0009555 )
anther development( GO:0048653 )
seed development( GO:0048316 )
peptidyl-lysine methylation( GO:0018022 )
histone methyltransferase activity (H3-K27 specific)( GO:0046976 )
Trait Ontology salt tolerance( TO:0006001 )
cold tolerance( TO:0000303 )
growth and development trait( TO:0000357 )
seed development trait( TO:0000653 )
seed set percent( TO:0000455 )
plant height( TO:0000207 )
panicle length( TO:0000040 )
Plant Ontology anther( PO:0009066 )
anther development stage( PO:0001004 )
pollen development stage( PO:0001007 )
D pollen mother cell meiosis stage( PO:0001009 )
seed development stage( PO:0001170 )
Related Strains
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Phenotype images
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Last updated
Dec 15, 2025

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