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Basic Information
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CGSNL Gene Symbol
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PSBA
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Gene Symbol Synonym
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PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1
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CGSNL Gene Name
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PHOTOSYSTEM II SUBUNIT PSBA
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Gene Name Synonym
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PSII subunit PsbA, photosystem II subunit PsbA, PSII 32kDa protein, photosystem II protein D1, QB Protein, Photosystem II D1 protein
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Protein Name
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Allele
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Chromosome No.
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Pt
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Explanation
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P0C433, P0C434. X15901:CAA34007 (Japonica Group chloroplast genome). GU592207:ADD62817 (Japonica Group chloroplast genome). AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46104: Nip001 (cultivar Nipponbare), AY522331 (isolate PA64S). L40578. M36191. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). DQ789329. PSBD1 in Liu et al. 2018, Liu et al. 2020. TO:0001150: chilling stress response.
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Trait Class
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Biochemical character
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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-
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MSU ID
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LOC_Osp1g00110
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RAP ID
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-
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Links
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Organelle Genome
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INSD Accession List
(Test version)
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Map
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Locate(cM)
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References
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Qiu Z., Wen S., Sun P., Chen D., Wang C., Song X., Xiao L., Zhang P., Zhao D., Wen C., Guan P., Du X., Sun Y., Xu C., Song J.
Plants (Basel) 2025 14(2)
RAS, a Pentatricopeptide Repeat Protein, Interacts with OsTRX z to Regulate Chloroplast Gene Transcription and RNA Processing.
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Liu D., Luo S., Li Z., Liang G., Guo Y., Xu Y., Chong K.
New Phytol. 2024 241(5) 2143-2157
COG3 confers the chilling tolerance to mediate OsFtsH2-D1 module in rice.
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Liu L., Wang Y., Tian Y., Song S., Wu Z., Ding X., Zheng H., Huang Y., Liu S., Dong X., Wan J., Liu L.
Plants (Basel) 2023 12(2)
Isolation and Characterization of <i>SPOTTED LEAF42</i> Encoding a Porphobilinogen Deaminase in Rice.
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Chen H., Wang Q., Fan M., Zhang X., Feng P., Zhu L., Wu J., Cheng X., Wang J.
Int J Mol Sci 2023 24(6)
A Single Nucleotide Variation of <i>CRS2</i> Affected the Establishment of Photosynthetic System in Rice.
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Xu J., Ji Z., Wang C., Xu F., Wang F., Zheng Y., Tang Y., Wei Z., Zhao T., Zhao K.
Front Plant Sci 2022 13 918673
<i>WATER-SOAKED SPOT1</i> Controls Chloroplast Development and leaf senescence <i>via</i> Regulating Reactive Oxygen Species Homeostasis in Rice.
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Lin D., Zhang T., Chen Y., Fan M., Kong R., Chen L., Wang Y., Xu J., Dong Y.
Biology (Basel) 2022 11(12)
Rice <i>TCD8</i> Encoding a multi-domain GTPase Is Crucial for Chloroplast Development of Early Leaf Stage at Low Temperatures.
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Xu T., Zhang J., Liu Y., Zhang Q., Li W., Zhang Y., Wu M., Chen T., Ding D., Wang W., Zhang Z.
Front Plant Sci 2022 13 986678
Exon skipping in <i>IspE</i> Gene is associated with abnormal chloroplast development in rice <i>albino leaf 4</i> mutant.
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Zeng F., Zhu L., Wang G., Liang Y., Ma D., Wang J.
Front Plant Sci 2022 13 915050
Higher CO2 Assimilation in Selected Rice Recombinant Inbred Lines Is Driven by Higher CO2 Diffusion and Light Use Efficiency Related to Leaf Anatomy and mesophyll cell Density.
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Liu X., Deng X.J., Li C.Y., Xiao Y.K., Zhao K., Guo J., Yang X.R., Zhang H.S., Chen C.P., Luo Y.T., Tang Y.L., Yang B., Sun C.H., Wang P.R.
Int J Mol Sci 2022 23(10)
Mutation of Protoporphyrinogen IX Oxidase Gene Causes Spotted and rolled leaf and Its Overexpression Generates Herbicide Resistance in Rice.
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Qiu Z., Chen D., Teng L., Guan P., Yu G., Zhang P., Song J., Zeng Q., Zhu L.
Rice (N Y) 2022 15(1) 50
OsWHY1 Interacts with OsTRX z and is Essential for Early Chloroplast Development in Rice.
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Wang Q., Zhu B., Chen C., Yuan Z., Guo J., Yang X., Wang S., Lv Y., Liu Q., Yang B., Sun C., Wang P., Deng X.
Rice (N Y) 2021 14(1) 50
A Single Nucleotide Substitution of GSAM Gene Causes Massive Accumulation of Glutamate 1-Semialdehyde and Yellow Leaf Phenotype in Rice.
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Zhou K., Zhang C., Xia J., Yun P., Wang Y., Ma T., Li Z.
Rice (N Y) 2021 14(1) 47
Albino seedling lethality 4; Chloroplast 30S Ribosomal Protein S1 is Required for Chloroplast Ribosome Biogenesis and Early Chloroplast Development in Rice.
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Zhu X., Ze M., Yin J., Chern M., Wang M., Zhang X., Deng R., Li Y., Liao H., Wang L., Tu B., Song L., He M., Li S., Wang W.M., Chen X., Wang J., Li W.
Plant Sci. 2020 290 110295
A phosphofructokinase B-type carbohydrate kinase family protein, PFKB1, is essential for chloroplast development at early seedling stage in rice.
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Wang H., Shi Y., Zhang X., Xu X., Wu J.L.
Int J Mol Sci 2020 21(4)
Characterization of a Novel Rice Dynamic Narrow-rolled leaf Mutant with Deficiencies in Aromatic Amino Acids.
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Fang G., Yang S., Ruan B., Liu C., Zhang A., Jiang H., Ding S., Tian B., Zhang Y., Jahan N., Zhu L., Zhang G., Dong G., Zhang Q., Zeng D., Guo L., Gao Z., Qian Q.
Rice (N Y) 2020 13(1) 49
Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice.
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Lin D., Kong R., Chen L., Wang Y., Wu L., Xu J., Piao Z., Lee G., Dong Y.
Sci Rep 2020 10(1) 8518
Chloroplast development at low temperature requires the pseudouridine synthase gene TCD3 in rice.
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Zhang Q., Shen L., Ren D., Hu J., Zhu L., Gao Z., Zhang G., Guo L., Zeng D., Qian Q.
Biomolecules 2020 10(2)
Characterization of the CRM Gene Family and Elucidating the Function of OsCFM2 in Rice.
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L L Liu, J You, Z Zhu, K Y Chen, M M Hu, H Gu, Z W Liu, Z Y Wang, Y H Wang, S J Liu, L M Chen, X Liu, Y L Tian, S R Zhou, L Jiang, J M Wan
Plant Cell Rep. 2020 39(1) 19-33
WHITE STRIPE LEAF8, encoding a deoxyribonucleoside kinase, is involved in chloroplast development in rice.
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Atul Prakash Sathe, Su X., Chen Z., Chen T., Wei X., Tang S., Xiao-Bo Zhang, Jian-Li Wu
Rice (N Y) 2019 12(1) 68
Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.
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Cheng R., Gong L., Li Z., Liang Y.K.
J. Plant Physiol. 2019 232 39-50
Rice BIG gene is required for seedling viability.
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Lin D., Zhang L., Mei J., Chen J., Piao Z., Lee G., Dong Y.
Plant Biol (Stuttg) 2019 21(4) 585-594
Mutation of the rice TCM12 gene encoding 2,3-bisphosphoglycerate-independent phosphoglycerate mutase affects chlorophyll synthesis, photosynthesis and chloroplast development at seedling stage at low temperatures.
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Gong P., Luo Y., Huang F., Chen Y., Zhao C., Wu X., Li K., Yang X., Cheng F., Xiang X., Wu C., Pan G.
Plant Mol. Biol. 2019 100(1-2) 133-149
Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.
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Zhang Q., Shen L., Wang Z., Hu G., Ren D., Hu J., Zhu L., Gao Z., Zhang G., Guo L., Zeng D., Qian Q.
Int J Mol Sci 2019 20(18)
OsCAF1, a CRM Domain Containing Protein, Influences Chloroplast Development.
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Chen N., Wang P., Li C., Wang Q., Pan J., Xiao F., Wang Y., Zhang K., Li C., Yang B., Sun C., Deng X.
Plant Cell Physiol. 2018
A single nucleotide mutation of IspE gene participating in the MEP pathway for isoprenoid biosynthesis causes green-revertible yellow leaf phenotype in rice.
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Xiao H., Xu Y., Ni C., Zhang Q., Zhong F., Huang J., Liu W., Peng L., Zhu Y., Hu J.
J. Exp. Bot. 2018 69(12) 2923-2936
A rice dual-localized pentatricopeptide repeat protein is involved in organellar RNA editing together with OsMORFs.
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Qiu Z., Chen D., He L., Zhang S., Yang Z., Zhang Y., Wang Z., Ren D., Qian Q., Guo L., Zhu L.
Rice (N Y) 2018 11(1) 39
The rice white green leaf 2 gene causes defects in chloroplast development and affects the plastid ribosomal protein S9.
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Liu Z., Wang Z., Gu H., You J., Hu M., Zhang Y., Zhu Z., Wang Y., Liu S., Chen L., Liu X., Tian Y., Zhou S., Jiang L., Liu L., Wan J.
Front Plant Sci 2018 9 782
Identification and Phenotypic Characterization of <i>ZEBRA LEAF16</i> Encoding a beta-hydroxyacyl-ACP dehydratase in Rice.
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Xu X., Chen Z., Shi Y.F., Wang H.M., He Y., Shi L., Chen T., Wu J.L., Zhang X.B.
BMC Plant Biol. 2018 18(1) 264
Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice.
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Huang R., Wang Y., Wang P., Li C., Xiao F., Chen N., Li N., Li C., Sun C., Li L., Chen R., Xu Z., Zhu J., Deng X.
Plant Mol. Biol. 2018 96(1-2) 5-16
A single nucleotide mutation of IspF gene involved in the MEP pathway for isoprenoid biosynthesis causes yellow-green leaf phenotype in rice.
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Lin D., Zheng K., Liu Z., Li Z., Teng S., Xu J., Dong Y.
Plant Genome 2018 11(1)
Rice <i>TCM1</i> Encoding a Component of the TAC Complex is Required for Chloroplast Development under Cold Stress.
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He Y., Li L., Zhang Z., Wu J.L.
Int J Mol Sci 2018 19(1)
Identification and Comparative Analysis of Premature Senescence Leaf Mutants in Rice (Oryza sativa L.).
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Lin D., Jiang Q., Ma X., Zheng K., Gong X., Teng S., Xu J., Dong Y.
G3 (Bethesda) 2018 8(1) 253-263
Rice <i>TSV3</i> Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.
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Wang Y., Ren Y., Zhou K., Liu L., Wang J., Xu Y., Zhang H., Zhang L., Feng Z., Wang L., Ma W., Wang Y., Guo X., Zhang X., Lei C., Cheng Z., Wan J.
Front Plant Sci 2017 8 1116
WHITE STRIPE LEAF4 Encodes a Novel P-Type PPR Protein Required for Chloroplast Biogenesis during Early Leaf Development.
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Ge C., Wang L., Ye W., Wu L., Cui Y., Chen P., Pan J., Zhang D., Hu J., Zeng D., Dong G., Qian Q., Guo L., Xue D.
Sci Rep 2017 7(1) 3298
Single-point Mutation of an Histidine-aspartic Domain-containing Gene involving in Chloroplast Ribosome Biogenesis Leads to White Fine Stripe Leaf in Rice.
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Sheng Z., Lv Y., Li W., Luo R., Wei X., Xie L., Jiao G., Shao G., Wang J., Tang S., Hu P.
PLoS ONE 2017 12(5) e0177989
Yellow-Leaf 1 encodes a magnesium-protoporphyrin IX monomethyl ester cyclase, involved in chlorophyll biosynthesis in rice (Oryza sativa L.).
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Zhang Z., Cui X., Wang Y., Wu J., Gu X., Lu T.
Mol Plant 2017 10(1) 86-98
The RNA Editing Factor wsp1 Is Essential for Chloroplast Development in Rice.
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Zhou K., Ren Y., Zhou F., Wang Y., Zhang L., Lyu J., Wang Y., Zhao S., Ma W., Zhang H., Wang L., Wang C., Wu F., Zhang X., Guo X., Cheng Z., Wang J., Lei C., Jiang L., Li Z., Wan J.
Planta 2017 245(1) 45-60
Young Seedling stripe1 encodes a chloroplast nucleoid-associated protein required for chloroplast development in rice seedlings.
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Morita R., Nakagawa M., Takehisa H., Hayashi Y., Ichida H., Usuda S., Ichinose K., Abe H., Shirakawa Y., Sato T., Fujiwara M.T., Itoh R.D., Abe T.
Biosci. Biotechnol. Biochem. 2017 81(2) 271-282
Heavy-ion beam mutagenesis identified an essential gene for chloroplast development under cold stress conditions during both early growth and tillering stages in rice.
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Wang Y., Zhang J., Shi X., Peng Y., Li P., Lin D., Dong Y., Teng S.
J. Exp. Bot. 2016
Temperature-sensitive albino gene tcd5, encoding a monooxygenase, affects chloroplast development at low temperatures.
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Zhang Z., Tan J., Shi Z., Xie Q., Xing Y., Liu C., Chen Q., Zhu H., Wang J., Zhang J., Zhang G.
Plant Physiol. 2016
albino leaf 1 that Encodes the sole Octotricopeptide Repeat Protein Is Responsible for Chloroplast Development in Rice.
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Wang F., Liu J., Chen M., Zhou L., Li Z., Zhao Q., Pan G., Zaidi S.H., Cheng F.
PLoS ONE 2016 11(8) e0161203
Involvement of Abscisic Acid in PSII Photodamage and D1 Protein Turnover for Light-Induced Premature Senescence of Rice Flag Leaves.
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Zheng K., Zhao J., Lin D., Chen J., Xu J., Zhou H., Teng S., Dong Y.
Rice (N Y) 2016 9(1) 13
The Rice TCM5 Gene Encoding a Novel Deg protease protein is Essential for Chloroplast Development under High Temperatures.
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Zhu X., Liang S., Yin J., Yuan C., Wang J., Li W., He M., Wang J., Chen W., Ma B., Wang Y., Qin P., Li S., Chen X.
Gene 2015
The DnaJ OsDjA7/8 is essential for chloroplast development in rice (Oryza sativa).
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Deng X.J., Zhang H.Q., Wang Y., He F., Liu J.L., Xiao X., Shu Z.F., Li W., Wang G.H., Wang G.L.
PLoS ONE 2014 9(6) e99564
Mapped clone and functional analysis of leaf-color gene ygl7 in a rice hybrid (Oryza sativa L. ssp. indica).
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Teng K., Li J., Liu L., Han Y., Du Y., Zhang J., Sun H., Zhao Q.
Acta Physiologiae Plantarum 2014 36 2219-2227
Exogenous ABA induces drought tolerance in upland rice: The role of chloroplast and ABA biosynthesis-related gene expression on photosystem II during PEG stress
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Dong H., Fei G.L., Wu C.Y., Wu F.Q., Sun Y.Y., Chen M.J., Ren Y.L., Zhou K.N., Cheng Z.J., Wang J.L., Jiang L., Zhang X., Guo X.P., Lei C.L., Su N., Wang H., Wan J.M.
Plant Physiol. 2013 162(4) 1867-80
A rice virescent-yellow leaf mutant reveals new insights into the role and assembly of plastid caseinolytic protease in higher plants.
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Zhou K., Ren Y., Lv J., Wang Y., Liu F., Zhou F., Zhao S., Chen S., Peng C., Zhang X., Guo X., Cheng Z., Wang J., Wu F., Jiang L., Wan J.
Planta 2013 237(1) 279-92
Young leaf chlorosis 1, a chloroplast-localized gene required for chlorophyll and lutein accumulation during early leaf development in rice.
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Chen H., Cheng Z., Ma X., Wu H., Liu Y., Zhou K., Chen Y., Ma W., Bi J., Zhang X., Guo X., Wang J., Lei C., Wu F., Lin Q., Liu Y., Liu L., Jiang L.
Plant Cell Rep. 2013 32(12) 1855-67
A knockdown mutation of YELLOW-GREEN LEAF2 blocks chlorophyll biosynthesis in rice.
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Zhang,T., Hu,S., Zhang,G., Pan,L., Zhang,X., Al-Mssallem,I.S. and Yu,J.
PLoS ONE 2012 7 (7) E42041
The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins
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Nock,C.J., Waters,D.L., Edwards,M.A., Bowen,S.G., Rice,N., Cordeiro,G.M. and Henry,R.J.
Plant Biotechnol J. 2011 9(3) 328-333
Chloroplast genome sequences from total DNA for plant identification
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Masood,M.S., Nishikawa,T., Fukuoka,S., Njenga,P.K., Tsudzuki,T. and Kadowaki,K.
Gene 2004 340(1) 133-139
The complete nucleotide sequence of wild rice (Oryza nivara) chloroplast genome: first genome wide comparative sequence analysis of wild and cultivated rice
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Tang,J., Xia,H., Cao,M., Zhang,X., Zeng,W., Hu,S., Tong,W., Wang,J., Wang,J., Yu,J., Yang,H. and Zhu,L.
Plant Physiol. 2004 135(1) 412-420
A Comparison of Rice Chloroplast Genomes.
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Shimada,H. and Sugiura,M.
Nucleic Acids Res. 1991 19(5) 983-995
Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes
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Hiratsuka,J., Shimada,H., Whittier,R., Ishibashi,T., Sakamoto,M., Mori,M., Kondo,C., Honji,Y., Sun,C.R. and Meng,B.Y.
Mol. Gen. Genet. 1989 217(2-3) 185-194
The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of cereals
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Moon,E. and Wu,R.
Gene 1988 70(1) 1-12
Organization and nucleotide sequence of genes at both junctions between the two inverted repeats and the large single-copy region in the rice chloroplast genome
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Wu,N.-H., Cote,J.-C. and Wu,R.
Dev Genet. 1987 8 339-350
Structure of the chloroplast psbA gene encoding the Q-B protein from Oryza sativa L
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DB Reference
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Gramene ID
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Ontologies
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Gene Ontology
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electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity( GO:0045156 )
oxidoreductase activity( GO:0016491 )
photosystem II( GO:0009523 )
response to herbicide( GO:0009635 )
photosynthetic electron transport in photosystem II( GO:0009772 )
iron ion binding( GO:0005506 )
response to abscisic acid stimulus( GO:0009737 )
photosystem II repair( GO:0010206 )
chloroplast thylakoid membrane( GO:0009535 )
plastid( GO:0009536 )
integral to membrane( GO:0016021 )
response to cold( GO:0009409 )
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Trait Ontology
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light sensitivity( TO:0000075 )
abscisic acid sensitivity( TO:0000615 )
cold tolerance( TO:0000303 )
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Plant Ontology
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Related Strains
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Phenotype images
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Last updated
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Feb 21, 2026
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Update info.