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Basic Information
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CGSNL Gene Symbol
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CDKD;1
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Gene Symbol Synonym
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CDKD;1, Orysa;CDKD;1, R2, OsR2, CAK R2, CDKD1;3
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CGSNL Gene Name
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CYCLIN-DEPENDENT KINASE D;1
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Gene Name Synonym
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Cyclin-Dependent Kinase-Activating Kinase R2
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Protein Name
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CYCLIN-DEPENDENT KINASE D;1
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Allele
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Chromosome No.
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5
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Explanation
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P29620. X58194. cdc2+/CDC28-related protein kinase. CDKD1;3 in Dedecker et al. 2016. CDK-activating kinase complex subunit. GO:1902893: regulation of miRNA transcription. GO:1900140: regulation of seedling development. TO:0000949: seedling growth and development trait.
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Trait Class
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Biochemical character
Character as QTL - Plant growth activity
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK120162
AK062401
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MSU ID
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LOC_Os05g32600.1
LOC_Os05g32600.2
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RAP ID
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Os05g0392300
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Singh D., Verma N., Rengasamy B., Banerjee G., Sinha A.K.
New Phytol. 2024 244(4) 1482-1497
The small RNA biogenesis in rice is regulated by MAP kinase-mediated OsCDKD phosphorylation.
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Zheng Y., Zhang S., Luo Y., Li F., Tan J., Wang B., Zhao Z., Lin H., Zhang T., Liu J., Liu X., Guo J., Xie X., Chen L., Liu Y.G., Chu Z.
Plant Commun 2022 3(6) 100412
Rice OsUBR7 modulates plant height by regulating histone H2B monoubiquitination and cell proliferation.
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Ikram A.U., Ding Y., Su Y.
Biomolecules 2021 11(8)
<i>OsARP6</i> Is Involved in Internode Elongation by Regulating Cell-Cycle-Related Genes.
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Dedecker M., Van Leene J., De Winne N., Eeckhout D., Persiau G., Van De Slijke E., Cannoot B., Vercruysse L., Dumoulin L., Wojsznis N., Gevaert K., Vandenabeele S., De Jaeger G.
Plant Mol. Biol. 2016
Transferring an optimized TAP-toolbox for the isolation of protein complexes to a portfolio of rice tissues.
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Guo J., Song J., Wang F., Xian Sheng Zhang
Plant Mol. Biol. 2007 64(4) 349-60
Genome-wide identification and expression analysis of rice cell cycle genes.
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Tanja Fabian-Marwedel, Umeda M., Sauter M.
Plant Cell 2002 14(1) 197-210
The rice cyclin-dependent kinase-activating kinase R2 regulates S-phase progression.
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M Yamaguchi, T Fabian, M Sauter, R P Bhalerao, J Schrader, G Sandberg, M Umeda, H Uchimiya
The Plant journal : for cell and molecular biology 2000 24(1) 11-20
Activation of CDK-activating kinase is dependent on interaction with H-type cyclins in plants.
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M Yamaguchi, M Umeda, H Uchimiya
Plant J. 1998 16(5) 613-9
A rice homolog of Cdk7/MO15 phosphorylates both cyclin-dependent protein kinases and the carboxy-terminal domain of RNA polymerase II.
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Hata,S.
FEBS Lett. 1991 279(1) 149-152
cDNA cloning of a novel cdc2+/CDC28-related protein kinase from rice.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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RNA polymerase II carboxy-terminal domain kinase activity( GO:0008353 )
cytoplasm( GO:0005737 )
nucleus( GO:0005634 )
ATP binding( GO:0005524 )
cyclin-dependent protein kinase activity( GO:0004693 )
cell division( GO:0051301 )
regulation of cell cycle( GO:0051726 )
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Trait Ontology
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growth and development trait( TO:0000357 )
plant height( TO:0000207 )
tiller number( TO:0000346 )
panicle number( TO:0000152 )
grain number( TO:0002759 )
root length( TO:0000227 )
flag leaf length( TO:0002757 )
flag leaf lamina width( TO:0002758 )
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Plant Ontology
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seedling development stage( PO:0007131 )
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Related Strains
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Phenotype images
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Last updated
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Mar 11, 2026
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Update info.