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Basic Information
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CGSNL Gene Symbol
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WOX11
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Gene Symbol Synonym
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OsWOX11, Os WOX11, OsWOX12A
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CGSNL Gene Name
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WUSCHEL-LIKE HOMEOBOX 11
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Gene Name Synonym
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WUSCHEL-related homeobox 11
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Protein Name
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WUSCHEL-LIKE HOMEOBOX 11
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Allele
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wox11-1, wox11, Oswox11-1, oswox11, oswox11-1, oswox11-2, oswox11-3, oswox11-4
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Chromosome No.
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7
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Explanation
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Q0D3I7. OsWOX12A in Cheng et al. 2014. GO:1990110: callus formation. PO:0025592: vascular leaf founder cell. TO:0000975: grain width. GO:0090567: reproductive shoot system development. GO:2000280: regulation of root development. TO:0000975: grain width. GO:0090311: regulation of protein deacetylation. GO:2000377: regulation of reactive oxygen species metabolic process.
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Trait Class
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Vegetative organ - Culm
Vegetative organ - Root
Seed - Morphological traits - Grain shape
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK073232
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MSU ID
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LOC_Os07g48560.1
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RAP ID
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Os07g0684900
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Tan M., Wang Y., Zhao Y.
Rice (N Y) 2025 18(1) 55
WOX11-OsPRX130 module confers rice drought tolerance by maintaining ROS homeostasis in rice root.
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Dong Y., Wainaina C.M., Kojima T., Inukai Y.
Front Plant Sci 2025 16 1718647
OUR1/OsbZIP1-<i>OsPIN9</i> regulatory module controls auxin-dependent crown root formation in rice.
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Geng L., Tan M., Deng Q., Wang Y., Zhang T., Hu X., Ye M., Lian X., Zhou D.X., Zhao Y.
Plant Cell 2024
Transcription factors WOX11 and LBD16 function with histone demethylase JMJ706 to control crown root development in rice.
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Li Y., Wang J., Gao Y., Pandey B.K., Peralta Ogorek LL., Zhao Y., Quan R., Zhao Z., Jiang L., Huang R., Qin H.
Plant Cell 2024 36(6) 2393-2409
The OsEIL1-OsWOX11 transcription factor module controls rice crown root development in response to soil compaction.
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Jhu M.Y., Kundu A.
Plant Cell 2024
WOX11-LBD16 double partner dancing: A feedback circuitry for crown root development in Rice.
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Xu Q., Wang Y., Yue Y., Chen Z., Zhou D.X., Zhao Y.
Plant Physiol. 2023 191(4) 2224-2228
Transcription factor WOX11 regulates protein translation via ribosome protein acetylation in rice roots.
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Xiong D., Wang R., Wang Y., Li Y., Sun G., Yao S.
Plant Biotechnol. J. 2023
SLG2 specifically regulates grain width through WOX11-mediated cell expansion control in rice.
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Han Y., Zhang C., Sha H., Wang X., Yu Y., Liu J., Zhao G., Wang J., Qiu G., Xu X., Fang J.
Rice (N Y) 2023 16(1) 9
Ubiquitin-conjugating enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.
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Kawai T., Shibata K., Akahoshi R., Nishiuchi S., Takahashi H., Nakazono M., Kojima T., Nosaka-Takahashi M., Sato Y., Toyoda A., Lucob-Agustin N., Kano-Nakata M., Suralta R.R., Niones J.M., Chen Y., Siddique K.H.M., Yamauchi A., Inukai Y.
Proc. Natl. Acad. Sci. U.S.A. 2022 119(1)
<i>WUSCHEL-related homeobox</i> family genes in rice control lateral root primordium size.
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Yu E., Yamaji N., Mochida K., Galis I., Asaka K., Ma J.F.
J. Exp. Bot. 2021
Lysine Ketoglutarate Reductase Trans-Splicing related 1 Is Involved In A Temperature-Dependent Root Growth in Rice.
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Huang L., Wang W., Zhang N., Cai Y., Liang Y., Meng X., Yuan Y., Li J., Wu D., Wang Y.
New Phytol. 2021 231(3) 1073-1087
LAZY2 controls rice tiller angle through regulating starch biosynthesis in gravity-sensing cells.
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Zhao N., Zhang K., Wang C., Yan H., Liu Y., Xu W., Su Z.
Front Genet 2020 11 766
Systematic Analysis of Differential H3K27me3 and H3K4me3 Deposition in Callus and Seedling Reveals the Epigenetic Regulatory Mechanisms Involved in Callus Formation in Rice.
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Mao C., He J., Liu L., Deng Q., Yao X., Liu C., Qiao Y., Li P., Ming F.
Plant Biotechnol. J. 2020 18(2) 429-442
OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.
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Li Y., Li J., Chen Z., Wei Y., Qi Y., Wu C.
Plant Biotechnol. J. 2020
OsmiR167a-targeted auxin response factors modulate tiller angle via fine-tuning auxin distribution in rice.
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Hu Y., Li S., Fan X., Song S., Zhou X., Weng X., Xiao J., Li X., Xiong L., You A., Xing Y.
Plant Physiol. 2020 184(3) 1424-1437
<i>OsHOX1</i> and <i>OsHOX28</i> Redundantly Shape Rice tiller angle by Reducing <i>HSFA2D</i> Expression and Auxin Content.
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Zhang N., Yu H., Yu H., Cai Y., Huang L., Xu C., Xiong G., Meng X., Wang J., Chen H., Liu G., Jing Y., Yuan Y., Liang Y., Li S., Smith S.M., Li J., Wang Y.
Plant Cell 2018 30(7) 1461-1475
A Core Regulatory Pathway Controlling Rice tiller angle Mediated by the <i>LAZY1</i>-Dependent Asymmetric Distribution of Auxin.
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Guo F., Zhang H., Liu W., Hu X., Han N., Qian Q., Xu L., Bian H.
Plant Cell Physiol. 2018
Callus initiation from root explants employs different strategies in rice and Arabidopsis.
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Hofmann N.R.
Plant Cell 2018 30(7) 1381-1382
The Dynamic Transcriptome: Using Clustered Time Points to Tease Apart Rice Tiller Angle Control.
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Hu B., Zhang G., Liu W., Shi J., Wang H., Qi M., Li J., Qin P., Ruan Y., Huang H., Zhang Y., Xu L.
Regeneration (Oxford, England) 2017 4(3) 132-139
Divergent regeneration-competent cells adopt a common mechanism for callus initiation in angiosperms.
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Jiang W., Zhou S., Zhang Q., Song H., Zhou D.X., Zhao Y.
J. Exp. Bot. 2017 68(11) 2787-2798
Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.
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Zhou S., Jiang W., Long F., Cheng S., Yang W., Zhao Y., Zhou D.X.
Plant Cell 2017 29(5) 1088-1104
Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of crown root Meristem.
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Zhao Y., Cheng S., Song Y., Huang Y., Zhou S., Liu X., Zhou D.X.
Plant Cell 2015
The Interaction between Rice ERF3 and WOX11 Promotes crown root Development by Regulating Gene Expression Involved in Cytokinin Signaling.
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Chen G., Feng H., Hu Q., Qu H., Chen A., Yu L., Xu G.
Plant Biotechnol. J. 2015
Improving rice tolerance to potassium deficiency by enhancing OsHAK16p:WOX11-controlled root development.
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Cheng S., Huang Y., Zhu N., Zhao Y.
Gene 2014 549(2) 266-74
The rice WUSCHEL-related homeobox genes are involved in reproductive organ development, hormone signaling and abiotic stress response.
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Zhao Y,Hu Y,Dai M,Huang L,Zhou DX
Plant Cell 2009 21 736-48
The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice.
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Zhou, Dao-Xiu
Plant Physiol. 2007 144(1) 380-390
A WUSCHEL-LIKE HOMEOBOX Gene Represses a YABBY Gene Expression Required for Rice Leaf Development.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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response to gibberellin stimulus( GO:0009739 )
cytokinin mediated signaling( GO:0009736 )
response to cytokinin stimulus( GO:0009735 )
auxin mediated signaling pathway( GO:0009734 )
response to water deprivation( GO:0009414 )
transcription factor activity( GO:0003700 )
response to cold( GO:0009409 )
nucleus( GO:0005634 )
transcription, DNA-dependent( GO:0006351 )
multicellular organismal development( GO:0007275 )
sequence-specific DNA binding( GO:0043565 )
root development( GO:0048364 )
cellular response to potassium ion starvation( GO:0051365 )
regulation of cell division( GO:0051302 )
auxin polar transport( GO:0009926 )
cell redox homeostasis( GO:0045454 )
response to auxin stimulus( GO:0009733 )
response to gravity( GO:0009629 )
cell fate commitment( GO:0045165 )
regeneration( GO:0031099 )
gravitropism( GO:0009630 )
shoot development( GO:0048367 )
positive regulation of cell growth( GO:0030307 )
response to ethylene stimulus( GO:0009723 )
ethylene mediated signaling pathway( GO:0009873 )
response to stress( GO:0006950 )
negative regulation of translation( GO:0017148 )
peptidyl-lysine acetylation( GO:0018394 )
adventitious root development( GO:0048830 )
water homeostasis( GO:0030104 )
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Trait Ontology
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cold tolerance( TO:0000303 )
drought tolerance( TO:0000276 )
plant growth hormone sensitivity( TO:0000401 )
cytokinin sensitivity( TO:0000167 )
gibberellic acid sensitivity( TO:0000166 )
tiller number( TO:0000346 )
crown root number( TO:0002685 )
root meristem development( TO:0002692 )
gravity response trait( TO:0002693 )
tiller angle( TO:0000567 )
root development trait( TO:0000656 )
root length( TO:0000227 )
shoot development trait( TO:0000654 )
plant height( TO:0000207 )
adventitious root number( TO:0001006 )
abiotic stress trait( TO:0000168 )
ethylene sensitivity( TO:0000173 )
grain length( TO:0000734 )
hydrogen peroxide content( TO:0000605 )
relative water content( TO:0000136 )
auxin sensitivity( TO:0000163 )
1000-seed weight( TO:0000382 )
grain yield per plant( TO:0000449 )
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Plant Ontology
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root meristem( PO:0006085 )
crown root emergence stage( PO:0007518 )
crown root( PO:0000043 )
root tip( PO:0000025 )
stem base( PO:0008039 )
formation of the leaf founder cells stage( PO:0001003 )
bundle sheath( PO:0006023 )
phloem pole pericycle cell( PO:0000065 )
lateral root primordium( PO:0000016 )
shoot system development stage( PO:0025527 )
root development stage( PO:0007520 )
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Related Strains
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Phenotype images
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Last updated
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Aug 2, 2026
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Update info.