Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol MIR5150
Gene Symbol Synonym miR5150, osa-miR5150, osa-MIR5150osa-miR5150-3p osa-miR5150-5p
CGSNL Gene Name MICRORNA5150
Gene Name Synonym MICRORNA5150, osa-miRNA5150
Protein Name _
Allele
Chromosome No. 4
Explanation miRBASE accession: MI0018065. LM382899, LM382898. GO:1901698: response to nitrogen compound. TO:0020093: nitrogen content. PO:0030104: caryopsis fruit.
Trait Class Seed - Physiological traits - Storage substances
Tolerance and resistance - Stress tolerance
Character as QTL - Grain quality
Other
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID -
RAP ID -
Links -
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Zhang Y., Fan X., Wang Y., Kong P., Zhao L., Fan X., Zhang Y.
Front Plant Sci 2023  14  1093676
<i>OsNAR2.1</i> induced endogenous nitrogen concentration variation affects transcriptional expression of miRNAs in rice.
Payne D., Li Y., Govindan G., Kumar A., Thomas J., Addo-Quaye CA., Pereira A., Sunkar R.
Int J Mol Sci 2023  24(14) 
High Daytime Temperature Responsive MicroRNA Profiles in Developing Grains of Rice Varieties with Contrasting Chalkiness.
Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011  23(12)  4185-207
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
Kozomara,A. and Griffiths-Jones,S.
Nucleic Acids Res. 2011  39  D152-D157
miRBase: integrating microRNA annotation and deep-sequencing data
DB Reference
Gramene ID -
Ontologies
Gene Ontology mRNA cleavage( GO:0006379 )
RNA-induced silencing complex( GO:0016442 )
micro-ribonucleoprotein complex( GO:0035068 )
gene silencing by miRNA( GO:0035195 )
response to heat( GO:0009408 )
Trait Ontology nitrogen sensitivity( TO:0000011 )
heat tolerance( TO:0000259 )
chalky endosperm( TO:0000266 )
Plant Ontology -
Related Strains
-
Phenotype images
-
Last updated
Nov 13, 2023

/rice/oryzabase