|
Basic Information
|
|
CGSNL Gene Symbol
|
MIR820A
|
|
Gene Symbol Synonym
|
miR820a, osa-miR820a, osa-MIR820a, OsmiR820a
|
|
CGSNL Gene Name
|
MICRORNA820A
|
|
Gene Name Synonym
|
MICRORNA820a, osa-miRNA820a
|
|
Protein Name
|
_
|
|
Allele
|
|
|
Chromosome No.
|
1
|
|
Explanation
|
miRBASE accession: MI0005263. target: Os03g0110800 (DRM2). LM380058. predicted targets for Osa-miR820: Os03g0110800, Os11g0127000, Os10g0572400, Os02g0612800, Os05g0548100, Os02g0666200.
|
|
Trait Class
|
Tolerance and resistance - Stress tolerance
Other
|
|
Expression
|
|
|
Sequence/Locus
|
|
cDNA Accession No.
|
-
|
|
MSU ID
|
-
|
|
RAP ID
|
-
|
|
Links
|
-
|
INSD Accession List
(Test version)
|
-
|
|
Map
|
|
Locate(cM)
|
|
|
Link map
|
Classical linkage map
|
|
References
|
|
Zhou J., Deng K., Cheng Y., Zhong Z., Tian L., Tang X., Tang A., Zheng X., Zhang T., Qi Y., Zhang Y.
Front Plant Sci 2017 8 1598
CRISPR-Cas9 Based Genome Editing Reveals New Insights into MicroRNA Function and Regulation in Rice.
|
|
Sharma N., Tripathi A., Sanan-Mishra N.
Front Plant Sci 2015 6 333
Profiling the expression domains of a rice-specific microRNA under stress.
|
|
Wei L.a b, Gu L.a, Song X.a, Cui X.a b, Lu Z.a, Zhou M.a, Wang L.a, Hu F.c, Zhai J.d e, Meyers B.C.d e, Cao X.a
Proc. Natl. Acad. Sci. U.S.A. 2014 111 3877-3882
Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice
|
|
Nosaka M., Ono A., Ishiwata A., Shimizu-Sato S., Ishimoto K., Noda Y., Sato Y.
Genes and Genetic Systems 2013 88 105-112
Expression of the rice microRNA miR820 is associated with epigenetic modifications at its own locus
|
|
Nosaka M., Itoh J., Nagato Y., Ono A., Ishiwata A., Sato Y.
PLoS Genet. 2012 8(9) e1002953
Role of transposon-derived small RNAs in the interplay between genomes and parasitic DNA in rice.
|
|
Kozomara,A. and Griffiths-Jones,S.
Nucleic Acids Res. 2011 39 D152-D157
miRBase: integrating microRNA annotation and deep-sequencing data
|
|
Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011 23(12) 4185-207
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
|
|
Wu L., Zhou H., Zhang Q., Zhang J., Ni F., Liu C., Qi Y.
Mol. Cell 2010 38(3) 465-75
DNA methylation mediated by a microRNA pathway.
|
|
Guo,X., Gui,Y., Wang,Y., Zhu,Q.H., Helliwell,C. and Fan,L.
BMC Genomics. 2008 9(1) 454
Selection and mutation on microRNA target sequences during rice evolution
|
|
DB Reference
|
|
Gramene ID
|
-
|
|
Ontologies
|
|
Gene Ontology
|
mRNA cleavage( GO:0006379 )
RNA-induced silencing complex( GO:0016442 )
micro-ribonucleoprotein complex( GO:0035068 )
gene silencing by miRNA( GO:0035195 )
response to heat( GO:0009408 )
response to water deprivation( GO:0009414 )
response to salt stress( GO:0009651 )
|
|
Trait Ontology
|
salt tolerance( TO:0006001 )
drought tolerance( TO:0000276 )
heat tolerance( TO:0000259 )
|
|
Plant Ontology
|
-
|
|
Related Strains
|
|
-
|
|
Phenotype images
|
|
-
|
|
Last updated
|
|
Feb 24, 2018
|
Update info.