Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol MIR396D
Gene Symbol Synonym miR396d, osa-miR396d, osa-MIR396d
CGSNL Gene Name MICRORNA396D
Gene Name Synonym MICRORNA396d, osa-miRNA396d
Protein Name _
Allele
Chromosome No. 4
Explanation miRBASE accession: MI0013049. TO:0000816: inflorescence bract anatomy and morphology trait. LM381452.
Trait Class Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
Other
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID -
RAP ID -
Links -
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Chen X., Jiang L., Zheng J., Chen F., Wang T., Wang M., Tao Y., Wang H., Hong Z., Huang Y., Huang R.
J. Exp. Bot. 2019  70(15)  3851-3866
A missense mutation in Large grain size 1 increases grain size and enhances cold tolerance in rice.
Chandran V., Wang H., Gao F., Cao X.L., Chen Y.P., Li G.B., Zhu Y., Yang X.M., Zhang L.L., Zhao Z.X., Zhao J.H., Wang Y.G., Li S., Fan J., Li Y., Zhao J.Q., Li S.Q., Wang W.M.
Front Plant Sci 2018  9  1999
MiR396-<i>OsGRF</i>s Module Balances Growth and Rice blast disease-Resistance.
Liu H., Guo S., Xu Y., Li C., Zhang Z., Zhang D., Xu S., Zhang C., Chong K.
Plant Physiol. 2014  165(1)  160-74
OsmiR396d-regulated OsGRFs Function in Floral Organogenesis in Rice through Binding to their Targets OsJMJ706 and OsCR4.
Kozomara,A. and Griffiths-Jones,S.
Nucleic Acids Res. 2011  39  D152-D157
miRBase: integrating microRNA annotation and deep-sequencing data
Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011  23(12)  4185-207
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
Ding Y., Chen Z., Zhu C.
J. Exp. Bot. 2011  62(10)  3563-73
Microarray-based analysis of cadmium-responsive microRNAs in rice (Oryza sativa).
Yong-Fang Li, Zheng Y., Charles Addo-Quaye, Zhang L., Saini A., Jagadeeswaran G., Michael J Axtell, Zhang W., Sunkar R.
Plant J. 2010  62(5)  742-59
Transcriptome-wide identification of microRNA targets in rice.
DB Reference
Gramene ID -
Ontologies
Gene Ontology mRNA cleavage( GO:0006379 )
RNA-induced silencing complex( GO:0016442 )
gene silencing by miRNA( GO:0035195 )
micro-ribonucleoprotein complex( GO:0035068 )
response to cadmium ion( GO:0046686 )
defense response to fungus( GO:0050832 )
response to cold( GO:0009409 )
Trait Ontology sterile lemma length( TO:0000240 )
floral organ development trait( TO:0006022 )
blast disease( TO:0000074 )
cold tolerance( TO:0000303 )
Plant Ontology -
Related Strains
-
Phenotype images
-
Last updated
Mar 4, 2020

/rice/oryzabase