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Basic Information
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CGSNL Gene Symbol
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MIR390
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Gene Symbol Synonym
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OsmiR390, miR390, osa-MIR390osa-miR390, osa-miR390-3p, osa-miR390-5p
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CGSNL Gene Name
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MICRORNA390
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Gene Name Synonym
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rice microRNA390
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Protein Name
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Allele
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mir390-1, mir390-2, mir390-3
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Chromosome No.
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3
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Explanation
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miRBASE accession: MI0001690. Target gene: Os02g0194400 (OsSRK). LM383082, LM379515. TO:0006059: cadmium concentration. predicted target: Os03g0738400, Os07g0490400. target gene: Os04g0571600 (OsMATE19). TO:0000845: collective phyllome structure morphology trait.
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Trait Class
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Vegetative organ - Root
Reproductive organ - Pollination, fertilization, fertility - Female sterility
Seed - Physiological traits - Dormancy
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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-
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MSU ID
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-
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RAP ID
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-
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Links
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INSD Accession List
(Test version)
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Park M., Shin S.Y., Moon H., Choi W., Shin C.
BMC Plant Biol. 2024 24(1) 215
Analysis of the global transcriptome and miRNAome associated with seed dormancy during seed maturation in rice (Oryza sativa L. cv. Nipponbare).
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Li H., You C., Yoshikawa M., Yang X., Gu H., Li C., Cui J., Chen X., Ye N., Zhang J., Wang G.
Cell Res. 2022 32(10) 931-945
A spontaneous thermo-sensitive female sterility mutation in rice enables fully mechanized hybrid breeding.
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Lu Y., Feng Z., Liu X., Bian L., Xie H., Zhang C., Mysore K.S., Liang J.
BMC Plant Biol. 2018 18(1) 261
MiR393 and miR390 synergistically regulate lateral root growth in rice under different conditions.
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Fang C., Zhang P., Jian X., Chen W., Lin H., Li Y., Lin W.
Plant Sci. 2017 262 115-126
Overexpression of Lsi1 in cold-sensitive rice mediates transcriptional regulatory networks and enhances resistance to chilling stress.
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Ding Y., Ye Y., Jiang Z., Wang Y., Zhu C.
Front Plant Sci 2016 7 235
MicroRNA390 Is Involved in Cadmium Tolerance and Accumulation in Rice.
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Carbonell A., Fahlgren N., Mitchell S., Cox K.L., Mockler T.C., Carrington J.C.
Plant J. 2015
Highly Specific Gene Silencing in a Monocot Species by Artificial MicroRNAs Derived From Chimeric MIRNA Precursors.
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Tian C., Zuo Z., Qiu J.L.
J Genet Genomics 2015 42(7) 393-402
Identification and Characterization of ABA-Responsive MicroRNAs in Rice.
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Ding Y., Chen Z., Zhu C.
J. Exp. Bot. 2011 62(10) 3563-73
Microarray-based analysis of cadmium-responsive microRNAs in rice (Oryza sativa).
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Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011 23(12) 4185-207
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
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Kozomara,A. and Griffiths-Jones,S.
Nucleic Acids Res. 2011 39 D152-D157
miRBase: integrating microRNA annotation and deep-sequencing data
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Wang,Y., Shen,D., Bo,S., Chen,H., Zheng,J., Zhu,Q.H., Cai,D., Helliwell,C. and Fan,L.
BMC Evol. Biol. 2010 10 119
Sequence variation and selection of small RNAs in domesticated rice
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Guo,X., Gui,Y., Wang,Y., Zhu,Q.H., Helliwell,C. and Fan,L.
BMC Genomics. 2008 9(1) 454
Selection and mutation on microRNA target sequences during rice evolution
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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micro-ribonucleoprotein complex( GO:0035068 )
mRNA cleavage( GO:0006379 )
RNA-induced silencing complex( GO:0016442 )
gene silencing by miRNA( GO:0035195 )
response to cadmium ion( GO:0046686 )
response to cold( GO:0009409 )
lateral root formation( GO:0010311 )
response to auxin stimulus( GO:0009733 )
defense response to bacterium( GO:0042742 )
response to water deprivation( GO:0009414 )
response to copper ion( GO:0046688 )
response to UV( GO:0009411 )
response to salt stress( GO:0009651 )
response to abscisic acid stimulus( GO:0009737 )
seed dormancy( GO:0010162 )
production of siRNA involved in RNA interference( GO:0030422 )
response to temperature stimulus( GO:0009266 )
response to heat( GO:0009408 )
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Trait Ontology
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cold tolerance( TO:0000303 )
auxin sensitivity( TO:0000163 )
abscisic acid sensitivity( TO:0000615 )
bacterial disease resistance( TO:0000315 )
drought tolerance( TO:0000276 )
copper sensitivity( TO:0000021 )
UV light sensitivity( TO:0000160 )
salt tolerance( TO:0006001 )
seed dormancy( TO:0000253 )
female sterility( TO:0000358 )
heat tolerance( TO:0000259 )
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Plant Ontology
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root primordium( PO:0005029 )
lateral root( PO:0020121 )
root tip( PO:0000025 )
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Related Strains
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Phenotype images
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Last updated
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Feb 21, 2026
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Update info.