Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol MIR171C
Gene Symbol Synonym miR171c, osa-miR171cosa-miR171c-3p osa-miR171c-5p
CGSNL Gene Name MICRORNA171C
Gene Name Synonym MICRORNA171c, osa-miRNA171c, delayed heading
Protein Name _
Allele dh
Chromosome No. 4
Explanation miRBASE accession: MI0001134. target gene(s): GRAS transcription factors. AY551251. LM379340, LM383072. The corresponding mRNA of Os04g0623901 (OsMIR171c) is AK242153, which is predicted to encode a precursor of the osa-miR171c. The dh mutant presented one T-DNA insertion site in the promoter region of the gene Os04g0623901 (Fan et al. 2015). TO:0000748: leaf anatomy and morphology trait.
Trait Class Vegetative organ - Leaf
Reproductive organ - Heading date
Tolerance and resistance - Stress tolerance
Other
Expression
Sequence/Locus
cDNA Accession No. AK242153
MSU ID -
RAP ID Os04g0623901
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM)
Link map Classical linkage map
References
Fan T., Li X., Yang W., Xia K., Ouyang J., Zhang M.
PLoS ONE 2015  10(5)  e0125833
Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and shoot apical meristem Maintenance by Repressing Four OsHAM Transcription Factors.
Devi S.J., Madhav M.S., Kumar G.R., Goel A.K., Umakanth B., Jahnavi B., Viraktamath B.C.
Gene 2013  531(1)  15-22
Identification of abiotic stress miRNA transcription factor binding motifs (TFBMs) in rice.
Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011  23(12)  4185-207
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
Kozomara,A. and Griffiths-Jones,S.
Nucleic Acids Res. 2011  39  D152-D157
miRBase: integrating microRNA annotation and deep-sequencing data
Li,Y., Li,W. and Jin,Y.X.
Acta Biochim. Biophys. Sin. (Shanghai) 2005  37 (2)  75-87
Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa
TextPresso Search Search textpresso for MIR171C ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology mRNA cleavage( GO:0006379 )
RNA-induced silencing complex( GO:0016442 )
gene silencing by miRNA( GO:0035195 )
micro-ribonucleoprotein complex( GO:0035068 )
vegetative to reproductive phase transition( GO:0010228 )
regulation of timing of transition from vegetative to reproductive phase( GO:0048510 )
photoperiodism, flowering( GO:0048573 )
Trait Ontology shoot apical meristem development( TO:0006020 )
days to heading( TO:0000137 )
flowering time( TO:0002616 )
Plant Ontology shoot apical meristem( PO:0020148 )
shoot apex( PO:0000037 )
Related Strains
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Phenotype images
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Last updated
Sep 18, 2015


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