Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | MIR171C |
| Gene Symbol Synonym | miR171c, osa-miR171cosa-miR171c-3p osa-miR171c-5p |
| CGSNL Gene Name | MICRORNA171C |
| Gene Name Synonym | MICRORNA171c, osa-miRNA171c, delayed heading |
| Protein Name | _ |
| Allele | dh |
| Chromosome No. | 4 |
| Explanation | miRBASE accession: MI0001134. target gene(s): GRAS transcription factors. AY551251. LM379340, LM383072. The corresponding mRNA of Os04g0623901 (OsMIR171c) is AK242153, which is predicted to encode a precursor of the osa-miR171c. The dh mutant presented one T-DNA insertion site in the promoter region of the gene Os04g0623901 (Fan et al. 2015). TO:0000748: leaf anatomy and morphology trait. |
| Trait Class |
Vegetative organ - Leaf
Reproductive organ - Heading date Tolerance and resistance - Stress tolerance Other |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK242153
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| MSU ID | - |
| RAP ID |
Os04g0623901 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
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| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Fan T., Li X., Yang W., Xia K., Ouyang J., Zhang M.
PLoS ONE 2015 10(5) e0125833 Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and shoot apical meristem Maintenance by Repressing Four OsHAM Transcription Factors.
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Devi S.J., Madhav M.S., Kumar G.R., Goel A.K., Umakanth B., Jahnavi B., Viraktamath B.C.
Gene 2013 531(1) 15-22 Identification of abiotic stress miRNA transcription factor binding motifs (TFBMs) in rice.
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Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011 23(12) 4185-207 Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
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Kozomara,A. and Griffiths-Jones,S.
Nucleic Acids Res. 2011 39 D152-D157 miRBase: integrating microRNA annotation and deep-sequencing data
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Li,Y., Li,W. and Jin,Y.X.
Acta Biochim. Biophys. Sin. (Shanghai) 2005 37 (2) 75-87 Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
mRNA cleavage( GO:0006379 )
RNA-induced silencing complex( GO:0016442 ) gene silencing by miRNA( GO:0035195 ) micro-ribonucleoprotein complex( GO:0035068 ) vegetative to reproductive phase transition( GO:0010228 ) regulation of timing of transition from vegetative to reproductive phase( GO:0048510 ) photoperiodism, flowering( GO:0048573 ) |
| Trait Ontology |
shoot apical meristem development( TO:0006020 )
days to heading( TO:0000137 ) flowering time( TO:0002616 ) |
| Plant Ontology |
shoot apical meristem( PO:0020148 )
shoot apex( PO:0000037 ) |
| Related Strains | |
| - | |
| Phenotype images | |
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| Last updated | |
| Sep 18, 2015 | |
