Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol MIR166K
Gene Symbol Synonym miR166k, osa-miR166kosa-miR166k-3p osa-miR166k-5p
CGSNL Gene Name MICRORNA166K
Gene Name Synonym MICRORNA166k, osa-miRNA166k
Protein Name _
Allele
Chromosome No. 2
Explanation miRBASE accession: MI0001107. HM139402-HM139410. LM379319, LM383065. target gene(s): MSTRG.24461.2, Os12g0281300 (Pita).
Trait Class Tolerance and resistance - Stress tolerance
Other
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID -
RAP ID -
Links -
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Li M., Li W., Zhao M., Li Z., Wang G.L., Liu W., Liang C.
BMC Genomics 2023  24(1)  643
Transcriptome analysis reveals a lncRNA-miRNA-mRNA regulatory network in OsRpp30-mediated disease resistance in rice.
Zhao W., Xiao W., Sun J., Chen M., Ma M., Cao Y., Cen W., Li R., Luo J.
Plants (Basel) 2022  11(7) 
An Integration of MicroRNA and Transcriptome Sequencing Analysis Reveal Regulatory Roles of miRNAs in Response to Chilling Stress in Wild Rice.
Zhai J., Zhao Y., Simon S.A., Huang S., Petsch K., Arikit S., Pillay M., Ji L., Xie M., Cao X., Yu B., Timmermans M., Yang B., Chen X., Meyers B.C.
Plant Cell 2013  25(7)  2417-28
Plant MicroRNAs Display Differential 3' Truncation and Tailing Modifications That Are ARGONAUTE1 Dependent and Conserved Across Species.
Devi S.J., Madhav M.S., Kumar G.R., Goel A.K., Umakanth B., Jahnavi B., Viraktamath B.C.
Gene 2013  531(1)  15-22
Identification of abiotic stress miRNA transcription factor binding motifs (TFBMs) in rice.
Kozomara,A. and Griffiths-Jones,S.
Nucleic Acids Res. 2011  39  D152-D157
miRBase: integrating microRNA annotation and deep-sequencing data
Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011  23(12)  4185-207
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
Ding Y., Chen Z., Zhu C.
J. Exp. Bot. 2011  62(10)  3563-73
Microarray-based analysis of cadmium-responsive microRNAs in rice (Oryza sativa).
Wang,Y., Shen,D., Bo,S., Chen,H., Zheng,J., Zhu,Q.H., Cai,D., Helliwell,C. and Fan,L.
BMC Evol. Biol. 2010  10  119
Sequence variation and selection of small RNAs in domesticated rice
DB Reference
Gramene ID -
Ontologies
Gene Ontology micro-ribonucleoprotein complex( GO:0035068 )
response to cadmium ion( GO:0046686 )
response to cold( GO:0009409 )
gene silencing by miRNA( GO:0035195 )
RNA-induced silencing complex( GO:0016442 )
mRNA cleavage( GO:0006379 )
Trait Ontology cold tolerance( TO:0000303 )
Plant Ontology -
Related Strains
-
Phenotype images
-
Last updated
Dec 25, 2023

/rice/oryzabase