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Basic Information
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CGSNL Gene Symbol
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MIR156C
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Gene Symbol Synonym
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miR156c, OsmiR156c, osmiR156c, osa-miR156c,osa-MIR156c, miR156c*osa-miR156c-3p osa-miR156c-5p
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CGSNL Gene Name
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MICRORNA156C
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Gene Name Synonym
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micro RNA 156c, microRNA156c, osa-miRNA156c
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Protein Name
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Allele
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Chromosome No.
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1
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Explanation
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miRBase accession: MI0000655. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family. OsmiR156b and OsmiR156c are mapped to the same transcription unit (accession no. AK110797). EU004233-EU004275 (Japonica, Indica and O. rufipogon)LM383044 LM379143
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Trait Class
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Tolerance and resistance - Disease resistance
Character as QTL - Plant growth activity
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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-
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MSU ID
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-
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RAP ID
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-
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Links
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INSD Accession List
(Test version)
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Cui Y., Cheng J., Ruan S., Qi P., Liu W., Bian H., Ye L., Zhang Y., Hu J., Dong G., Guo L., Zhang Y., Qian Q., Hu X.
J Integr Plant Biol 2020 62(12) 1839-1852
The heterochronic gene Oryza sativa LIKE HETEROCHROMATIN PROTEIN 1 modulates miR156b/c/i/e levels.
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Zhang D., Liu M., Tang M., Dong B., Wu D., Zhang Z., Zhou B.
Plant Sci. 2015 237 24-32
Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice.
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Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011 23(12) 4185-207
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
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Kozomara,A. and Griffiths-Jones,S.
Nucleic Acids Res. 2011 39 D152-D157
miRBase: integrating microRNA annotation and deep-sequencing data
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Wang S,Zhu QH,Guo X,Gui Y,Bao J,Helliwell C,Fan L
FEBS Lett. 2007 581 4789-93
Molecular evolution and selection of a gene encoding two tandem microRNAs in rice.
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Luo YC,Zhou H,Li Y,Chen JY,Yang JH,Chen YQ,Qu LH
FEBS Lett. 2006 580 5111-6
Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development.
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Xie K, Wu C, Xiong L.
Plant Physiol. 2006 142(1) 280-293
Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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regulation of hormone metabolic process( GO:0032350 )
vegetative phase change( GO:0010050 )
mRNA cleavage( GO:0006379 )
RNA-induced silencing complex( GO:0016442 )
micro-ribonucleoprotein complex( GO:0035068 )
gene silencing by miRNA( GO:0035195 )
defense response to fungus( GO:0050832 )
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Trait Ontology
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blast disease( TO:0000074 )
growth and development trait( TO:0000357 )
growth hormone content( TO:0000476 )
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Plant Ontology
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-
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Related Strains
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Phenotype images
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Last updated
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Jan 17, 2022
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Update info.